Source Name	Provider	Material Type	Term Source REF	Characteristics[Organism]	Term Source REF	Characteristics[Sex]	Term Source REF	Characteristics[DiseaseState]	Term Source REF	Comment[OCG Cohort]	Comment[dbGaP Study]	Sample Name	Material Type	Term Source REF	Characteristics[OrganismPart]	Term Source REF	Description	Protocol REF	Performer	Extract Name	Material Type	Term Source REF	Comment[SRA_SAMPLE]	Protocol REF	Performer	Extract Name	Comment[LIBRARY_LAYOUT]	Comment[LIBRARY_SOURCE]	Comment[LIBRARY_STRATEGY]	Comment[LIBRARY_SELECTION]	Comment[NOMINAL_LENGTH]	Comment[LIBRARY_NAME]	Comment[SRA_EXPERIMENT]	Protocol REF	Performer	Date	Assay Name	Technology Type	Term Source REF	Comment[SPOT_LENGTH]	Protocol REF	Parameter Value[Software Versions]	Protocol REF	Derived Array Data File	Comment[SRA_RUN]	Comment[SRA_FILE_URI]	Comment[OCG Data Level]	Comment[ASSEMBLY_NAME]	Comment[QC Warning]	Protocol REF	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]	Protocol REF	Derived Array Data File	Comment[OCG Data Level]
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-09A-01D	DNA	EFO	SRS511168	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G10	SRX387268	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-09A-01D GS02045-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70141-FS3_L01.bam	SRR1043187	@dbgap@:reads/SRP011999/SRS511168/SRX387268/SRR1043187/SRR1043187.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft16B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft18B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsPrimary.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-14A-01D	DNA	EFO	SRS511701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H10	SRX387809	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-14A-01D GS02045-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69475-FS3_L01.bam	SRR1043984	@dbgap@:reads/SRP011999/SRS511701/SRX387809/SRR1043984/SRR1043984.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1B-01D	DNA	EFO	SRS513133	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D05	SRX389452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1B-01D GS02045-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70154-FS3_L01.bam	SRR1046089	@dbgap@:reads/SRP011999/SRS513133/SRX389452/SRR1046089/SRR1046089.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft1C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.1C-01D	DNA	EFO	SRS515236	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F05	SRX392018	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.1C-01D GS02046-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70464-FS3_L01.bam	SRR1049841	@dbgap@:reads/SRP011999/SRS515236/SRX392018/SRR1049841/SRR1049841.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft2A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.2A-01D	DNA	EFO	SRS512682	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E05	SRX388826	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.2A-01D GS02045-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L01.bam	SRR1045068	@dbgap@:reads/SRP011999/SRS512682/SRX388826/SRR1045068/SRR1045068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3A-01D	DNA	EFO	SRS511707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F05	SRX387815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3A-01D GS02045-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70018-FS3_L01.bam	SRR1044009	@dbgap@:reads/SRP011999/SRS511707/SRX387815/SRR1044009/SRR1044009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft3C.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.3C-01D	DNA	EFO	SRS513997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G05	SRX390535	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.3C-01D GS02046-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L03.bam	SRR1047975	@dbgap@:reads/SRP011999/SRS513997/SRX390535/SRR1047975/SRR1047975.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4A-01D	DNA	EFO	SRS511698	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G05	SRX387807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4A-01D GS02045-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68716-FS3_L01.bam	SRR1043976	@dbgap@:reads/SRP011999/SRS511698/SRX387807/SRR1043976/SRR1043976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft4B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.4B-01D	DNA	EFO	SRS513446	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H05	SRX389703	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.4B-01D GS02045-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68719-FS3_L01.bam	SRR1046779	@dbgap@:reads/SRP011999/SRS513446/SRX389703/SRR1046779/SRR1046779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft5A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.5A-01D	DNA	EFO	SRS511696	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A06	SRX387805	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.5A-01D GS02045-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70667-FS3_L01.bam	SRR1043959	@dbgap@:reads/SRP011999/SRS511696/SRX387805/SRR1043959/SRR1043959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft6A.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.6A-01D	DNA	EFO	SRS512678	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B06	SRX388823	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.6A-01D GS02045-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70156-FS3_L01.bam	SRR1045059	@dbgap@:reads/SRP011999/SRS512678/SRX388823/SRR1045059/SRR1045059.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft10B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.10B-01D	DNA	EFO	SRS513475	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D06	SRX389741	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.10B-01D GS02045-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70155-FS3_L01.bam	SRR1046840	@dbgap@:reads/SRP011999/SRS513475/SRX389741/SRR1046840/SRR1046840.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft16B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft16B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.16B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.16B-01D	DNA	EFO	SRS513472	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C06	SRX389735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.16B-01D GS02045-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70152-FS3_L03.bam	SRR1046827	@dbgap@:reads/SRP011999/SRS513472/SRX389735/SRR1046827/SRR1046827.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft16B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft16B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABC_NormalVsXenograft18B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABC_NormalVsXenograft18B.png	4			
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABC-60.18B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABC-60.18B-01D	DNA	EFO	SRS513156	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E06	SRX389478	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABC-60.18B-01D GS02045-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70153-FS3_L01.bam	SRR1046138	@dbgap@:reads/SRP011999/SRS513156/SRX389478/SRR1046138/SRR1046138.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABC_NormalVsXenograft18B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABC_NormalVsXenograft18B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-09A-01D	DNA	EFO	SRS511703	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A11	SRX387811	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-09A-01D GS02045-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69856-FS3_L01.bam	SRR1043991	@dbgap@:reads/SRP011999/SRS511703/SRX387811/SRR1043991/SRR1043991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsPrimary.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-14A-01D	DNA	EFO	SRS511705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C11	SRX387813	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-14A-01D GS02045-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L01.bam	SRR1043999	@dbgap@:reads/SRP011999/SRS511705/SRX387813/SRR1043999/SRR1043999.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1A-01D	DNA	EFO	SRS513571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F06	SRX389839	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1A-01D GS02045-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68721-FS3_L01.bam	SRR1046950	@dbgap@:reads/SRP011999/SRS513571/SRX389839/SRR1046950/SRR1046950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft1B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.1B-01D	DNA	EFO	SRS513591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G06	SRX390043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.1B-01D GS02045-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69446-FS3_L01.bam	SRR1047222	@dbgap@:reads/SRP011999/SRS513591/SRX390043/SRR1047222/SRR1047222.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft3A.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.3A-01D	DNA	EFO	SRS513572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H06	SRX390016	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.3A-01D GS02045-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69449-FS3_L01.bam	SRR1046957	@dbgap@:reads/SRP011999/SRS513572/SRX390016/SRR1046957/SRR1046957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft4B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.4B-01D	DNA	EFO	SRS513527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A07	SRX389793	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.4B-01D GS02045-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70157-FS3_L01.bam	SRR1046898	@dbgap@:reads/SRP011999/SRS513527/SRX389793/SRR1046898/SRR1046898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABD_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABD_NormalVsXenograft6B.png	4			
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABD-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABD-60.6B-01D	DNA	EFO	SRS513114	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B07	SRX389432	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABD-60.6B-01D GS02045-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69447-FS3_L01.bam	SRR1046044	@dbgap@:reads/SRP011999/SRS513114/SRX389432/SRR1046044/SRR1046044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABD_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABD_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-09A-01D	DNA	EFO	SRS511044	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B12	SRX387137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-09A-01D GS02045-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66985-FS3_L01.bam	SRR1042938	@dbgap@:reads/SRP011999/SRS511044/SRX387137/SRR1042938/SRR1042938.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft9C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft18C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft19C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsPrimary.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-14A-01D	DNA	EFO	SRS512685	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C12	SRX388830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-14A-01D GS02045-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69417-FS3_L03.bam	SRR1045075	@dbgap@:reads/SRP011999/SRS512685/SRX388830/SRR1045075/SRR1045075.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02045-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft1C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.1C-01D	DNA	EFO	SRS517745	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_F09	SRX396777	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.1C-01D GS02064-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71648-FS3_L01.bam	SRR1055913	@dbgap@:reads/SRP011999/SRS517745/SRX396777/SRR1055913/SRR1055913.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft3C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.3C-01D	DNA	EFO	SRS511676	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A10	SRX387780	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.3C-01D GS02045-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69414-FS3_L01.bam	SRR1043917	@dbgap@:reads/SRP011999/SRS511676/SRX387780/SRR1043917/SRR1043917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft5C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.5C-01D	DNA	EFO	SRS511627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B10	SRX387729	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.5C-01D GS02045-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70828-FS3_L01.bam	SRR1043799	@dbgap@:reads/SRP011999/SRS511627/SRX387729/SRR1043799/SRR1043799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft9C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft9C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.9C-01D	DNA	EFO	SRS511167	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C10	SRX387267	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.9C-01D GS02045-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70124-FS3_L01.bam	SRR1043180	@dbgap@:reads/SRP011999/SRS511167/SRX387267/SRR1043180/SRR1043180.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft11C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.11C-01D	DNA	EFO	SRS510565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D10	SRX386540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.11C-01D GS02045-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70668-FS3_L01.bam	SRR1042244	@dbgap@:reads/SRP011999/SRS510565/SRX386540/SRR1042244/SRR1042244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft18C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft18C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.18C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.18C-01D	DNA	EFO	SRS511697	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E10	SRX387806	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.18C-01D GS02045-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70122-FS3_L01.bam	SRR1043968	@dbgap@:reads/SRP011999/SRS511697/SRX387806/SRR1043968/SRR1043968.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft18C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft18C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-CAAABF_NormalVsXenograft19C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-CAAABF_NormalVsXenograft19C.png	4			
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-CAAABF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-CAAABF-60.19C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-CAAABF-60.19C-01D	DNA	EFO	SRS510643	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F10	SRX386621	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-CAAABF-60.19C-01D GS02045-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69971-FS3_L03.bam	SRR1042359	@dbgap@:reads/SRP011999/SRS510643/SRX386621/SRR1042359/SRR1042359.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-CAAABF_NormalVsXenograft19C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-CAAABF_NormalVsXenograft19C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAIXPH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-03A-01D	DNA	EFO	SRS118017	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F03	SRX130106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-03A-01D GS00660-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17977-FS3_L01.bam	SRR445936	@dbgap@:reads/SRP011998/SRS118017/SRX130106/SRR445936/SRR445936.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAIXPH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXPH_NormalVsPrimary.png	4			
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXPH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXPH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAIXPH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXPH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXPH-10A-01D	DNA	EFO	SRS118018	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H04	SRX130105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXPH-10A-01D GS00660-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19403-FS3_L01.bam	SRR445944	@dbgap@:reads/SRP011998/SRS118018/SRX130105/SRR445944/SRR445944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAIXSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-03A-01D	DNA	EFO	SRS118019	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E04	SRX130215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-03A-01D GS00660-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17413-FS3_L01.bam	SRR446263	@dbgap@:reads/SRP011998/SRS118019/SRX130215/SRR446263/SRR446263.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAIXSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAIXSD_NormalVsPrimary.png	4			
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAIXSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAIXSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAIXSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAIXSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAIXSD-14A-01D	DNA	EFO	SRS118020	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G05	SRX130214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAIXSD-14A-01D GS00660-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17583-FS3_L01.bam	SRR446271	@dbgap@:reads/SRP011998/SRS118020/SRX130214/SRR446271/SRR446271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-03A-01D	DNA	EFO	SRS510281	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A06	SRX363990	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-03A-01D GS02031-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68203-FS3_L01.bam	SRR1011215	@dbgap@:reads/SRP011999/SRS510281/SRX363990/SRR1011215/SRR1011215.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKHZT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-10A-01D	DNA	EFO	SRS189985	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKHZT-10A-01D HS1323 library	PAIRED	GENOMIC	WGS	RANDOM		HS1323	SRX060110	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKHZT-10A-01D HS1323 run	sequencing assay	EFO	100	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.3.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1323.bam	SRR457640	@dbgap@:reads/SRP011998/SRS189985/SRX060110/SRR457640/SRR457640.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1323_14_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft15B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsPrimary.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-14A-01D	DNA	EFO	SRS510258	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B06	SRX365128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-14A-01D GS02031-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69305-FS3_L01.bam	SRR1012842	@dbgap@:reads/SRP011999/SRS510258/SRX365128/SRR1012842/SRR1012842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft1A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.1A-01D	DNA	EFO	SRS513071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C07	SRX389390	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.1A-01D GS02045-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L01.bam	SRR1045976	@dbgap@:reads/SRP011999/SRS513071/SRX389390/SRR1045976/SRR1045976.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft2A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.2A-01D	DNA	EFO	SRS513350	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E07	SRX389600	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.2A-01D GS02045-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69756-FS3_L01.bam	SRR1046660	@dbgap@:reads/SRP011999/SRS513350/SRX389600/SRR1046660/SRR1046660.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft3A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.3A-01D	DNA	EFO	SRS518071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F07	SRX397111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.3A-01D GS02045-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69663-FS3_L01.bam	SRR1056348	@dbgap@:reads/SRP011999/SRS518071/SRX397111/SRR1056348/SRR1056348.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft4A.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.4A-01D	DNA	EFO	SRS518070	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G07	SRX397110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.4A-01D GS02045-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70536-FS3_L01.bam	SRR1056341	@dbgap@:reads/SRP011999/SRS518070/SRX397110/SRR1056341/SRR1056341.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft7B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.7B-01D	DNA	EFO	SRS513972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C03	SRX390507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.7B-01D GS02045-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69754-FS3_L01.bam	SRR1047917	@dbgap@:reads/SRP011999/SRS513972/SRX390507/SRR1047917/SRR1047917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft9B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.9B-01D	DNA	EFO	SRS513717	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A03	SRX390171	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.9B-01D GS02045-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70533-FS3_L01.bam	SRR1047566	@dbgap@:reads/SRP011999/SRS513717/SRX390171/SRR1047566/SRR1047566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft13B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.13B-01D	DNA	EFO	SRS513701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B03	SRX390156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.13B-01D GS02045-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70532-FS3_L03.bam	SRR1047542	@dbgap@:reads/SRP011999/SRS513701/SRX390156/SRR1047542/SRR1047542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKHZT_NormalVsXenograft15B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKHZT_NormalVsXenograft15B.png	4			
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKHZT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKHZT-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKHZT-60.15B-01D	DNA	EFO	SRS513119	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D03	SRX389436	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKHZT-60.15B-01D GS02045-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70306-FS3_L01.bam	SRR1046061	@dbgap@:reads/SRP011999/SRS513119/SRX389436/SRR1046061/SRR1046061.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKHZT_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKHZT_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsPrimary03A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-03A-01D	DNA	EFO	SRS118021	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C04	SRX128372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-03A-01D GS00660-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS16903-FS3_L01.bam	SRR442751	@dbgap@:reads/SRP011998/SRS118021/SRX128372/SRR442751/SRR442751.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsPrimary09A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-09A-01D	DNA	EFO	SRS270492	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C06	SRX363976	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-09A-01D GS02031-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69281-FS3_L01.bam	SRR1011190	@dbgap@:reads/SRP011998/SRS270492/SRX363976/SRR1011190/SRR1011190.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKCA-14A-01D HS1543 library	SINGLE	GENOMIC	WGS	RANDOM		HS1543	SRX060117	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKCA-14A-01D HS1543 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.4.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1543_4_lanes_dupsFlagged.bam	SRR457647	@dbgap@:reads/SRP011998/SRS118022/SRX060117/SRR457647/SRR457647.sra	2	HG19		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1543_4_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsPrimary03A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00676-CLS_E08	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00676-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsPrimary03A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary03A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E05	SRX128371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS00660-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS19515-FS3_L01.bam	SRR442759	@dbgap@:reads/SRP011998/SRS118022/SRX128371/SRR442759/SRR442759.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsPrimary09A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsPrimary09A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKCA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-14A-01D	DNA	EFO	SRS118022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D06	SRX364114	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-14A-01D GS02031-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69282-FS3_L01.bam	SRR1011442	@dbgap@:reads/SRP011998/SRS118022/SRX364114/SRR1011442/SRR1011442.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft1A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.1A-01D	DNA	EFO	SRS513137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H07	SRX389457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.1A-01D GS02045-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70664-FS3_L01.bam	SRR1046101	@dbgap@:reads/SRP011999/SRS513137/SRX389457/SRR1046101/SRR1046101.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKCA_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKCA_NormalVsXenograft2A.png	4			
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKCA-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKCA-60.2A-01D	DNA	EFO	SRS513568	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A08	SRX389837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKCA-60.2A-01D GS02045-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69412-FS3_L01.bam	SRR1046943	@dbgap@:reads/SRP011999/SRS513568/SRX389837/SRR1046943/SRR1046943.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKCA_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKCA_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKXB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-03A-01D	DNA	EFO	SRS510289	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E06	SRX364112	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-03A-01D GS02031-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69283-FS3_L01.bam	SRR1011427	@dbgap@:reads/SRP011999/SRS510289/SRX364112/SRR1011427/SRR1011427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKKXB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-10A-01D	DNA	EFO	SRS189988	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKKXB-10A-01D HS1547 library	SINGLE	GENOMIC	WGS	RANDOM		HS1547	SRX060121	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKKXB-10A-01D HS1547 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.4.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1547.bam	SRR457651	@dbgap@:reads/SRP011998/SRS189988/SRX060121/SRR457651/SRR457651.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1547_4_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKXB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKXB_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsPrimary.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-14A-01D	DNA	EFO	SRS510290	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F06	SRX365138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-14A-01D GS02031-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69284-FS3_L01.bam	SRR1012865	@dbgap@:reads/SRP011999/SRS510290/SRX365138/SRR1012865/SRR1012865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKKXB_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKKXB_NormalVsXenograft2A.png	4			
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKKXB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKKXB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKKXB-60.2A-01D	DNA	EFO	SRS514041	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B08	SRX390580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKKXB-60.2A-01D GS02045-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L01.bam	SRR1048000	@dbgap@:reads/SRP011999/SRS514041/SRX390580/SRR1048000/SRR1048000.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKKXB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKKXB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMJF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-03A-01D	DNA	EFO	SRS118023	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B04	SRX128713	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-03A-01D GS00660-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18154-FS3_L01.bam	SRR443427	@dbgap@:reads/SRP011998/SRS118023/SRX128713/SRR443427/SRR443427.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMJF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00669-CLS_A11	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00669-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMJF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMJF_NormalVsPrimary.png	4			
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKMJF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMJF-14A-01D	DNA	EFO	SRS118024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00667-CLS_H08	SRX128712	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMJF-14A-01D GS00667-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS20665-FS3_L01.bam	SRR443435	@dbgap@:reads/SRP011998/SRS118024/SRX128712/SRR443435/SRR443435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-09A-01D	DNA	EFO	SRS510283	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G06	SRX363997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-09A-01D GS02031-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69290-FS3_L01.bam	SRR1011232	@dbgap@:reads/SRP011999/SRS510283/SRX363997/SRR1011232/SRR1011232.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsPrimary.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-14A-01D	DNA	EFO	SRS510280	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H06	SRX363988	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-14A-01D GS02031-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68417-FS3_L01.bam	SRR1011208	@dbgap@:reads/SRP011999/SRS510280/SRX363988/SRR1011208/SRR1011208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft1A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.1A-01D	DNA	EFO	SRS504707	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G06	SRX380254	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.1A-01D GS02040-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L03.bam	SRR1033623	@dbgap@:reads/SRP011999/SRS504707/SRX380254/SRR1033623/SRR1033623.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft2A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.2A-01D	DNA	EFO	SRS504704	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H06	SRX380248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.2A-01D GS02040-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66171-FS3_L01.bam	SRR1033597	@dbgap@:reads/SRP011999/SRS504704/SRX380248/SRR1033597/SRR1033597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft3A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.3A-01D	DNA	EFO	SRS504706	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A07	SRX380251	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.3A-01D GS02040-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69187-FS3_L01.bam	SRR1033614	@dbgap@:reads/SRP011999/SRS504706/SRX380251/SRR1033614/SRR1033614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft4A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.4A-01D	DNA	EFO	SRS503448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B07	SRX378881	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.4A-01D GS02040-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66176-FS3_L01.bam	SRR1032063	@dbgap@:reads/SRP011999/SRS503448/SRX378881/SRR1032063/SRR1032063.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft5A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.5A-01D	DNA	EFO	SRS504709	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C07	SRX380258	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.5A-01D GS02040-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66177-FS3_L01.bam	SRR1033638	@dbgap@:reads/SRP011999/SRS504709/SRX380258/SRR1033638/SRR1033638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMVD_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMVD_NormalVsXenograft6A.png	4			
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMVD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMVD-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMVD-60.6A-01D	DNA	EFO	SRS504705	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E07	SRX380249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMVD-60.6A-01D GS02040-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66159-FS3_L01.bam	SRR1033605	@dbgap@:reads/SRP011999/SRS504705/SRX380249/SRR1033605/SRR1033605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMVD_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMVD_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-03A-01D	DNA	EFO	SRS510285	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A07	SRX363998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-03A-01D GS02031-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68204-FS3_L01.bam	SRR1011239	@dbgap@:reads/SRP011999/SRS510285/SRX363998/SRR1011239/SRR1011239.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsPrimary.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-14A-01D	DNA	EFO	SRS510288	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B07	SRX364111	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-14A-01D GS02031-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68407-FS3_L01.bam	SRR1011414	@dbgap@:reads/SRP011999/SRS510288/SRX364111/SRR1011414/SRR1011414.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft1B.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.1B-01D	DNA	EFO	SRS513974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F03	SRX390511	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.1B-01D GS02045-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70149-FS3_L01.bam	SRR1047933	@dbgap@:reads/SRP011999/SRS513974/SRX390511/SRR1047933/SRR1047933.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKMZM_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKMZM_NormalVsXenograft2A.png	4			
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKMZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKMZM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKMZM-60.2A-01D	DNA	EFO	SRS514048	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C08	SRX390586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKMZM-60.2A-01D GS02045-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70147-FS3_L03.bam	SRR1048015	@dbgap@:reads/SRP011999/SRS514048/SRX390586/SRR1048015/SRR1048015.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKMZM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKMZM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-03A-01D	DNA	EFO	SRS510282	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C07	SRX363996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-03A-01D GS02031-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68836-FS3_L01.bam	SRR1011225	@dbgap@:reads/SRP011999/SRS510282/SRX363996/SRR1011225/SRR1011225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft11B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsPrimary.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-10A-01D	DNA	EFO	SRS510284	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E07	SRX363999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-10A-01D GS02031-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69288-FS3_L01.bam	SRR1011247	@dbgap@:reads/SRP011999/SRS510284/SRX363999/SRR1011247/SRR1011247.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1A-01D	DNA	EFO	SRS509609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F07	SRX385499	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1A-01D GS02040-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66999-FS3_L01.bam	SRR1041035	@dbgap@:reads/SRP011999/SRS509609/SRX385499/SRR1041035/SRR1041035.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft1B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.1B-01D	DNA	EFO	SRS503443	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F05	SRX378874	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.1B-01D GS02040-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L01.bam	SRR1032054	@dbgap@:reads/SRP011999/SRS503443/SRX378874/SRR1032054/SRR1032054.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft2A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.2A-01D	DNA	EFO	SRS504701	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G07	SRX380244	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.2A-01D GS02040-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L01.bam	SRR1033588	@dbgap@:reads/SRP011999/SRS504701/SRX380244/SRR1033588/SRR1033588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3A-01D	DNA	EFO	SRS504700	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H07	SRX380243	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3A-01D GS02040-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67004-FS3_L03.bam	SRR1033581	@dbgap@:reads/SRP011999/SRS504700/SRX380243/SRR1033581/SRR1033581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft3B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.3B-01D	DNA	EFO	SRS503436	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_G05	SRX378867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.3B-01D GS02040-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69394-FS3_L03.bam	SRR1032042	@dbgap@:reads/SRP011999/SRS503436/SRX378867/SRR1032042/SRR1032042.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft4A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.4A-01D	DNA	EFO	SRS504580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A08	SRX380122	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.4A-01D GS02040-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69189-FS3_L01.bam	SRR1033448	@dbgap@:reads/SRP011999/SRS504580/SRX380122/SRR1033448/SRR1033448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft5A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.5A-01D	DNA	EFO	SRS504442	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B08	SRX379984	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.5A-01D GS02040-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67827-FS3_L01.bam	SRR1033294	@dbgap@:reads/SRP011999/SRS504442/SRX379984/SRR1033294/SRR1033294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft6A.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.6A-01D	DNA	EFO	SRS506999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C08	SRX382861	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.6A-01D GS02040-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67828-FS3_L01.bam	SRR1037203	@dbgap@:reads/SRP011999/SRS506999/SRX382861/SRR1037203/SRR1037203.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft7B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.7B-01D	DNA	EFO	SRS503404	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A06	SRX378833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.7B-01D GS02040-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69186-FS3_L01.bam	SRR1032001	@dbgap@:reads/SRP011999/SRS503404/SRX378833/SRR1032001/SRR1032001.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft9B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.9B-01D	DNA	EFO	SRS503451	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C06	SRX378884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.9B-01D GS02040-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65945-FS3_L01.bam	SRR1032090	@dbgap@:reads/SRP011999/SRS503451/SRX378884/SRR1032090/SRR1032090.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft11B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft11B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.11B-01D	DNA	EFO	SRS503379	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H05	SRX378807	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.11B-01D GS02040-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65940-FS3_L01.bam	SRR1031964	@dbgap@:reads/SRP011999/SRS503379/SRX378807/SRR1031964/SRR1031964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKRSL_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKRSL_NormalVsXenograft13B.png	4			
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKRSL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKRSL-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKRSL-60.13B-01D	DNA	EFO	SRS503400	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B06	SRX378829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKRSL-60.13B-01D GS02040-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65943-FS3_L01.bam	SRR1031989	@dbgap@:reads/SRP011999/SRS503400/SRX378829/SRR1031989/SRR1031989.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKRSL_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKRSL_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-09A-01D	DNA	EFO	SRS287445	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E05	SRX160833	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-09A-01D GS01043-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48774-FS3_L01.bam	SRR524852	@dbgap@:reads/SRP011999/SRS287445/SRX160833/SRR524852/SRR524852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft12B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft14B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsPrimary.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-10A-01D	DNA	EFO	SRS160202	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F05	SRX160832	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-10A-01D GS01043-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48775-FS3_L01.bam	SRR524860	@dbgap@:reads/SRP011999/SRS160202/SRX160832/SRR524860/SRR524860.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft1B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.1B-01D	DNA	EFO	SRS514739	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A02	SRX391504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.1B-01D GS02046-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70467-FS3_L01.bam	SRR1049079	@dbgap@:reads/SRP011999/SRS514739/SRX391504/SRR1049079/SRR1049079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft2A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.2A-01D	DNA	EFO	SRS514740	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B02	SRX391505	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.2A-01D GS02046-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70323-FS3_L01.bam	SRR1049086	@dbgap@:reads/SRP011999/SRS514740/SRX391505/SRR1049086/SRR1049086.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft3A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.3A-01D	DNA	EFO	SRS515243	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C02	SRX392027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.3A-01D GS02046-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70031-FS3_L01.bam	SRR1049901	@dbgap@:reads/SRP011999/SRS515243/SRX392027/SRR1049901/SRR1049901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4A-01D	DNA	EFO	SRS514050	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D02	SRX390588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4A-01D GS02046-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71150-FS3_L01.bam	SRR1048026	@dbgap@:reads/SRP011999/SRS514050/SRX390588/SRR1048026/SRR1048026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft4B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.4B-01D	DNA	EFO	SRS516235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E02	SRX393265	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.4B-01D GS02046-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70461-FS3_L03.bam	SRR1051529	@dbgap@:reads/SRP011999/SRS516235/SRX393265/SRR1051529/SRR1051529.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft5A.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.5A-01D	DNA	EFO	SRS513984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F02	SRX390522	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.5A-01D GS02046-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69445-FS3_L01.bam	SRR1047956	@dbgap@:reads/SRP011999/SRS513984/SRX390522/SRR1047956/SRR1047956.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft7B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.7B-01D	DNA	EFO	SRS515242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H02	SRX392025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.7B-01D GS02046-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70032-FS3_L01.bam	SRR1049890	@dbgap@:reads/SRP011999/SRS515242/SRX392025/SRR1049890/SRR1049890.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft10B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.10B-01D	DNA	EFO	SRS516218	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G02	SRX393262	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.10B-01D GS02046-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70469-FS3_L01.bam	SRR1051520	@dbgap@:reads/SRP011999/SRS516218/SRX393262/SRR1051520/SRR1051520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft12B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft12B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.12B-01D	DNA	EFO	SRS516148	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A03	SRX393184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.12B-01D GS02046-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70057-FS3_L01.bam	SRR1051378	@dbgap@:reads/SRP011999/SRS516148/SRX393184/SRR1051378/SRR1051378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKSWW_NormalVsXenograft14B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKSWW_NormalVsXenograft14B.png	4			
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKSWW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKSWW-60.14B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKSWW-60.14B-01D	DNA	EFO	SRS516022	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B03	SRX393076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKSWW-60.14B-01D GS02046-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70037-FS3_L01.bam	SRR1051243	@dbgap@:reads/SRP011999/SRS516022/SRX393076/SRR1051243/SRR1051243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKSWW_NormalVsXenograft14B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKSWW_NormalVsXenograft14B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKTAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-09A-01D	DNA	EFO	SRS510246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F07	SRX364000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-09A-01D GS02031-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69285-FS3_L01.bam	SRR1011254	@dbgap@:reads/SRP011999/SRS510246/SRX364000/SRR1011254/SRR1011254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKTAL-14A-01D HS1322 library	PAIRED	GENOMIC	WGS	RANDOM		HS1322	SRX060109	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKTAL-14A-01D HS1322 run	sequencing assay	EFO	100	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.3.2	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1322.bam	SRR457639	@dbgap@:reads/SRP011998/SRS189990/SRX060109/SRR457639/SRR457639.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1322_14_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKTAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKTAL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsPrimary.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKTAL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-14A-01D	DNA	EFO	SRS189990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G07	SRX364113	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-14A-01D GS02031-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69287-FS3_L01.bam	SRR1011435	@dbgap@:reads/SRP011998/SRS189990/SRX364113/SRR1011435/SRR1011435.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKTAL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKTAL_NormalVsXenograft1A.png	4			
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKTAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKTAL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKTAL-60.1A-01D	DNA	EFO	SRS511694	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A11	SRX387802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKTAL-60.1A-01D GS02039-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70827-FS3_L01.bam	SRR1043951	@dbgap@:reads/SRP011999/SRS511694/SRX387802/SRR1043951/SRR1043951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKTAL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKTAL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-03A-01D	DNA	EFO	SRS510287	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H07	SRX364002	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-03A-01D GS02031-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69289-FS3_L01.bam	SRR1011268	@dbgap@:reads/SRP011999/SRS510287/SRX364002/SRR1011268/SRR1011268.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsPrimary.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-10A-01D	DNA	EFO	SRS510286	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A08	SRX364001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-10A-01D GS02031-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L01.bam	SRR1011261	@dbgap@:reads/SRP011999/SRS510286/SRX364001/SRR1011261/SRR1011261.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKVKK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-14A-01D	DNA	EFO	SRS189992	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKVKK-14A-01D HS1324 library	PAIRED	GENOMIC	WGS	RANDOM		HS1324	SRX060111	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAII:01	BCCA		TARGET-10-PAKVKK-14A-01D HS1324 run	sequencing assay	EFO	100	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.4.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1324.bam	SRR457641	@dbgap@:reads/SRP011998/SRS189992/SRX060111/SRR457641/SRR457641.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1324_14_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft1A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.1A-01D	DNA	EFO	SRS513144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H02	SRX389467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.1A-01D GS02045-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70465-FS3_L01.bam	SRR1046120	@dbgap@:reads/SRP011999/SRS513144/SRX389467/SRR1046120/SRR1046120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft2A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.2A-01D	DNA	EFO	SRS514741	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C03	SRX391507	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.2A-01D GS02046-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70325-FS3_L01.bam	SRR1049096	@dbgap@:reads/SRP011999/SRS514741/SRX391507/SRR1049096/SRR1049096.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft3A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.3A-01D	DNA	EFO	SRS515865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D03	SRX392904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.3A-01D GS02046-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71580-FS3_L01.bam	SRR1051047	@dbgap@:reads/SRP011999/SRS515865/SRX392904/SRR1051047/SRR1051047.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft4A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.4A-01D	DNA	EFO	SRS514742	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E03	SRX391508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.4A-01D GS02046-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L01.bam	SRR1049106	@dbgap@:reads/SRP011999/SRS514742/SRX391508/SRR1049106/SRR1049106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKVKK_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKVKK_NormalVsXenograft5A.png	4			
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKVKK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKVKK-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKVKK-60.5A-01D	DNA	EFO	SRS514743	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F03	SRX391509	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKVKK-60.5A-01D GS02046-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70279-FS3_L01.bam	SRR1049113	@dbgap@:reads/SRP011999/SRS514743/SRX391509/SRR1049113/SRR1049113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKVKK_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKVKK_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-09A-01D	DNA	EFO	SRS510262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B08	SRX365140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-09A-01D GS02031-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69306-FS3_L03.bam	SRR1012872	@dbgap@:reads/SRP011999/SRS510262/SRX365140/SRR1012872/SRR1012872.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAKYEP-14A-01D HS1544 library	PAIRED	GENOMIC	WGS	RANDOM		HS1544	SRX060118	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAKYEP-14A-01D HS1544 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.4.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1544.bam	SRR457648	@dbgap@:reads/SRP011998/SRS189994/SRX060118/SRR457648/SRR457648.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1544_4_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft2B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsPrimary.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYEP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-14A-01D	DNA	EFO	SRS189994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C08	SRX365141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-14A-01D GS02031-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69295-FS3_L01.bam	SRR1012879	@dbgap@:reads/SRP011998/SRS189994/SRX365141/SRR1012879/SRR1012879.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft1A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.1A-01D	DNA	EFO	SRS513973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E03	SRX390508	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.1A-01D GS02045-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70466-FS3_L01.bam	SRR1047925	@dbgap@:reads/SRP011999/SRS513973/SRX390508/SRR1047925/SRR1047925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2A-01D	DNA	EFO	SRS514814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G03	SRX391581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2A-01D GS02046-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70328-FS3_L01.bam	SRR1049133	@dbgap@:reads/SRP011999/SRS514814/SRX391581/SRR1049133/SRR1049133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft2B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft2B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.2B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.2B-01D	DNA	EFO	SRS514780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H03	SRX391547	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.2B-01D GS02045-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70762-FS3_L01.bam	SRR1049126	@dbgap@:reads/SRP011999/SRS514780/SRX391547/SRR1049126/SRR1049126.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft2B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft2B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3A-01D	DNA	EFO	SRS515241	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H03	SRX392023	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3A-01D GS02046-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70329-FS3_L01.bam	SRR1049881	@dbgap@:reads/SRP011999/SRS515241/SRX392023/SRR1049881/SRR1049881.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft3B.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.3B-01D	DNA	EFO	SRS514053	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A04	SRX390593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.3B-01D GS02045-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70759-FS3_L01.bam	SRR1048048	@dbgap@:reads/SRP011999/SRS514053/SRX390593/SRR1048048/SRR1048048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft4A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.4A-01D	DNA	EFO	SRS515227	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A04	SRX392017	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.4A-01D GS02046-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70331-FS3_L01.bam	SRR1049834	@dbgap@:reads/SRP011999/SRS515227/SRX392017/SRR1049834/SRR1049834.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft5A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.5A-01D	DNA	EFO	SRS515239	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C04	SRX392021	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.5A-01D GS02046-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70222-FS3_L01.bam	SRR1049866	@dbgap@:reads/SRP011999/SRS515239/SRX392021/SRR1049866/SRR1049866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft6A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.6A-01D	DNA	EFO	SRS515238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D04	SRX392020	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.6A-01D GS02046-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70327-FS3_L03.bam	SRR1049859	@dbgap@:reads/SRP011999/SRS515238/SRX392020/SRR1049859/SRR1049859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYEP_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYEP_NormalVsXenograft7A.png	4			
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYEP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAKYEP-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYEP-60.7A-01D	DNA	EFO	SRS515237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E04	SRX392019	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYEP-60.7A-01D GS02046-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70330-FS3_L01.bam	SRR1049848	@dbgap@:reads/SRP011999/SRS515237/SRX392019/SRR1049848/SRR1049848.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYEP_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYEP_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYKZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-03A-01D	DNA	EFO	SRS118025	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F04	SRX130191	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-03A-01D GS00660-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17560-FS3_L01.bam	SRR446135	@dbgap@:reads/SRP011998/SRS118025/SRX130191/SRR446135/SRR446135.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAKYKZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAKYKZ_NormalVsPrimary.png	4			
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAKYKZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAKYKZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAKYKZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAKYKZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAKYKZ-14A-01D	DNA	EFO	SRS118026	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H05	SRX130190	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAKYKZ-14A-01D GS00660-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18156-FS3_L01.bam	SRR446143	@dbgap@:reads/SRP011998/SRS118026/SRX130190/SRR446143/SRR446143.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALETF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALETF-03A-01D	DNA	EFO	SRS189995	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-03A-01D HS2773 library	PAIRED	GENOMIC	WGS	RANDOM	443	HS2773	SRX060128	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-03A-01D HS2773 run	sequencing assay	EFO	202	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.8.70.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS2773.bam	SRR457658	@dbgap@:reads/SRP011998/SRS189995/SRX060128/SRR457658/SRR457658.sra	2	GRCh37	While analyzing this WGS library for subclonal mutations, we discovered that this sample has been contaminated (most likely during library construction) with a significant amount of DNA from another patient in the study (TARGET-10-PALJDL-03A-01D). We determined that the contaminating DNA is likely from the malignant cells of the other patient as sequences corresponding to polymorphisms and somatic mutations in the contaminating patient's genome can be detected. Based on the mean level of read support for variants unique to the contaminating patient's genome, we estimate the amount of contamination to be 20-30%. Despite this contamination, we had sufficient power to detect clonal somatic mutations in the genome of this patient as described in Roberts et al, 2012.	bcgsc.ca:Protocol:WGS-VariantCall:01		HS2773_17_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PALETF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALETF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALETF-14A-01D	DNA	EFO	SRS189997	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALETF-14A-01D HS1545 library	PAIRED	GENOMIC	WGS	RANDOM		HS1545	SRX060119	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALETF-14A-01D HS1545 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.8.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1545.bam	SRR457649	@dbgap@:reads/SRP011998/SRS189997/SRX060119/SRR457649/SRR457649.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1545_16_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PALIBN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIBN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIBN-10A-01D	DNA	EFO	SRS189999	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALIBN-10A-01D HS1546 library	PAIRED	GENOMIC	WGS	RANDOM		HS1546	SRX060120	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALIBN-10A-01D HS1546 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.4.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1546.bam	SRR457650	@dbgap@:reads/SRP011998/SRS189999/SRX060120/SRR457650/SRR457650.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1546_4_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALIYC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-03A-01D	DNA	EFO	SRS118027	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_E03	SRX128884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-03A-01D GS00660-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17410-FS3_L01.bam	SRR444023	@dbgap@:reads/SRP011998/SRS118027/SRX128884/SRR444023/SRR444023.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALIYC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALIYC_NormalVsPrimary.png	4			
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALIYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALIYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALIYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALIYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALIYC-14A-01D	DNA	EFO	SRS118028	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G04	SRX128883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALIYC-14A-01D GS00660-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17582-FS3_L01.bam	SRR444031	@dbgap@:reads/SRP011998/SRS118028/SRX128883/SRR444031/SRR444031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-09A-01D	DNA	EFO	SRS510292	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D08	SRX365145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-09A-01D GS02031-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69296-FS3_L01.bam	SRR1012889	@dbgap@:reads/SRP011999/SRS510292/SRX365145/SRR1012889/SRR1012889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsPrimary.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-14A-01D	DNA	EFO	SRS510291	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E08	SRX365133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-14A-01D GS02031-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69316-FS3_L01.bam	SRR1012853	@dbgap@:reads/SRP011999/SRS510291/SRX365133/SRR1012853/SRR1012853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1A-01D	DNA	EFO	SRS506989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D02	SRX382852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1A-01D GS02039-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67829-FS3_L01.bam	SRR1037169	@dbgap@:reads/SRP011999/SRS506989/SRX382852/SRR1037169/SRR1037169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft1B.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.1B-01D	DNA	EFO	SRS503450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D06	SRX378883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.1B-01D GS02040-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65946-FS3_L01.bam	SRR1032079	@dbgap@:reads/SRP011999/SRS503450/SRX378883/SRR1032079/SRR1032079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft2A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.2A-01D	DNA	EFO	SRS506998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E02	SRX382860	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.2A-01D GS02039-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69489-FS3_L01.bam	SRR1037196	@dbgap@:reads/SRP011999/SRS506998/SRX382860/SRR1037196/SRR1037196.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJCF_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJCF_NormalVsXenograft3A.png	4			
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJCF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJCF-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJCF-60.3A-01D	DNA	EFO	SRS506997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F02	SRX382859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJCF-60.3A-01D GS02039-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69613-FS3_L01.bam	SRR1037189	@dbgap@:reads/SRP011999/SRS506997/SRX382859/SRR1037189/SRR1037189.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJCF_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJCF_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-03A-01D	DNA	EFO	SRS190000	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-03A-01D HS2772 library	PAIRED	GENOMIC	WGS	RANDOM		HS2772	SRX060127	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-03A-01D HS2772 run	sequencing assay	EFO	202	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.8.70.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS2772.bam	SRR457657	@dbgap@:reads/SRP011998/SRS190000/SRX060127/SRR457657/SRR457657.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS2772_14_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-09A-01D	DNA	EFO	SRS270496	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F08	SRX375788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-09A-01D GS02031-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69297-FS3_L01.bam	SRR1028354	@dbgap@:reads/SRP011998/SRS270496/SRX375788/SRR1028354/SRR1028354.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALJDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-10A-01D	DNA	EFO	SRS190002	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALJDL-10A-01D HS1548 library	PAIRED	GENOMIC	WGS	RANDOM		HS1548	SRX060122	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PALJDL-10A-01D HS1548 run	sequencing assay	EFO	194	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.5.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1548.bam	SRR457652	@dbgap@:reads/SRP011998/SRS190002/SRX060122/SRR457652/SRR457652.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1548_16_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsPrimary.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-14A-01D	DNA	EFO	SRS501214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G08	SRX376589	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-14A-01D GS02031-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68328-FS3_L01.bam	SRR1028626	@dbgap@:reads/SRP011999/SRS501214/SRX376589/SRR1028626/SRR1028626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft1A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.1A-01D	DNA	EFO	SRS515240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_F04	SRX392022	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.1A-01D GS02046-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71147-FS3_L01.bam	SRR1049873	@dbgap@:reads/SRP011999/SRS515240/SRX392022/SRR1049873/SRR1049873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft2A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.2A-01D	DNA	EFO	SRS516013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_G04	SRX393059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.2A-01D GS02046-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70226-FS3_L01.bam	SRR1051216	@dbgap@:reads/SRP011999/SRS516013/SRX393059/SRR1051216/SRR1051216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft3A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.3A-01D	DNA	EFO	SRS516002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_H04	SRX393047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.3A-01D GS02046-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70943-FS3_L01.bam	SRR1051200	@dbgap@:reads/SRP011999/SRS516002/SRX393047/SRR1051200/SRR1051200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4A.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4A-01D	DNA	EFO	SRS515892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_A05	SRX392931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4A-01D GS02046-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70230-FS3_L01.bam	SRR1051080	@dbgap@:reads/SRP011999/SRS515892/SRX392931/SRR1051080/SRR1051080.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft4B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.4B-01D	DNA	EFO	SRS514736	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B04	SRX391500	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.4B-01D GS02045-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L01.bam	SRR1048917	@dbgap@:reads/SRP011999/SRS514736/SRX391500/SRR1048917/SRR1048917.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALJDL_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALJDL_NormalVsXenograft6B.png	4			
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALJDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALJDL-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALJDL-60.6B-01D	DNA	EFO	SRS514737	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C04	SRX391501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALJDL-60.6B-01D GS02045-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70151-FS3_L01.bam	SRR1049011	@dbgap@:reads/SRP011999/SRS514737/SRX391501/SRR1049011/SRR1049011.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALJDL_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALJDL_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALKMM-03A-01D A03587 library	PAIRED	GENOMIC	WGS	RANDOM		A03587	SRX100079	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA		TARGET-10-PALKMM-03A-01D A03587 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.7.48.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A03587-1..bam	SRR351115	@dbgap@:reads/SRP011998/SRS118029/SRX100079/SRR351115/SRR351115.sra	2	NCBI36_BCCAGSC_variant		bcgsc.ca:Protocol:WGS-VariantCall:01		A03587_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKMM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-03A-01D	DNA	EFO	SRS118029	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A04	SRX130182	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-03A-01D GS00660-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17911-FS3_L01.bam	SRR446103	@dbgap@:reads/SRP011998/SRS118029/SRX130182/SRR446103/SRR446103.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PALKMM-14A-01D A03588 library	PAIRED	GENOMIC	WGS	RANDOM		A03588	SRX100080	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2000:01	BCCA	2011-01-31	TARGET-10-PALKMM-14A-01D A03588 run	sequencing assay	EFO	200	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.7.48.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A03588-1..bam	SRR351125	@dbgap@:reads/SRP011998/SRS118030/SRX100080/SRR351125/SRR351125.sra	2	NCBI36		bcgsc.ca:Protocol:WGS-VariantCall:01		A03588_10_lanes_dupsFlagged.varFilter.anno1.maf.txt	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKMM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKMM_NormalVsPrimary.png	4			
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKMM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKMM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALKMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALKMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKMM-14A-01D	DNA	EFO	SRS118030	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_C05	SRX130181	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKMM-14A-01D GS00660-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17695-FS3_L01.bam	SRR446111	@dbgap@:reads/SRP011998/SRS118030/SRX130181/SRR446111/SRR446111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-03A-01D	DNA	EFO	SRS501208	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H08	SRX376582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-03A-01D GS02031-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68834-FS3_L01.bam	SRR1028613	@dbgap@:reads/SRP011999/SRS501208/SRX376582/SRR1028613/SRR1028613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsPrimary.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-14A-01D	DNA	EFO	SRS501680	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A09	SRX376790	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-14A-01D GS02031-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68206-FS3_L01.bam	SRR1028869	@dbgap@:reads/SRP011999/SRS501680/SRX376790/SRR1028869/SRR1028869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1A-01D	DNA	EFO	SRS507035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G02	SRX382879	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1A-01D GS02039-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L01.bam	SRR1037233	@dbgap@:reads/SRP011999/SRS507035/SRX382879/SRR1037233/SRR1037233.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft1B.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.1B-01D	DNA	EFO	SRS503449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E06	SRX378882	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.1B-01D GS02040-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65955-FS3_L01.bam	SRR1032071	@dbgap@:reads/SRP011999/SRS503449/SRX378882/SRR1032071/SRR1032071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALKTY_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALKTY_NormalVsXenograft2A.png	4			
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALKTY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALKTY-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALKTY-60.2A-01D	DNA	EFO	SRS506990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H02	SRX382853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALKTY-60.2A-01D GS02039-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69612-FS3_L03.bam	SRR1037176	@dbgap@:reads/SRP011999/SRS506990/SRX382853/SRR1037176/SRR1037176.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALKTY_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALKTY_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-03A-01D	DNA	EFO	SRS501466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B09	SRX375789	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-03A-01D GS02031-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68403-FS3_L03.bam	SRR1028361	@dbgap@:reads/SRP011999/SRS501466/SRX375789/SRR1028361/SRR1028361.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft8B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft12B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft15B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft17B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsPrimary.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-14A-01D	DNA	EFO	SRS501337	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C09	SRX375658	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-14A-01D GS02031-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68406-FS3_L01.bam	SRR1028218	@dbgap@:reads/SRP011999/SRS501337/SRX375658/SRR1028218/SRR1028218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft1B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.1B-01D	DNA	EFO	SRS514056	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D04	SRX390597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.1B-01D GS02045-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70463-FS3_L01.bam	SRR1048064	@dbgap@:reads/SRP011999/SRS514056/SRX390597/SRR1048064/SRR1048064.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft2A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.2A-01D	DNA	EFO	SRS516144	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_B05	SRX393180	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.2A-01D GS02046-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70945-FS3_L01.bam	SRR1051369	@dbgap@:reads/SRP011999/SRS516144/SRX393180/SRR1051369/SRR1051369.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3A-01D	DNA	EFO	SRS516071	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_C05	SRX393126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3A-01D GS02046-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70944-FS3_L01.bam	SRR1051305	@dbgap@:reads/SRP011999/SRS516071/SRX393126/SRR1051305/SRR1051305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft3B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.3B-01D	DNA	EFO	SRS514981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E04	SRX391751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.3B-01D GS02045-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70228-FS3_L01.bam	SRR1049435	@dbgap@:reads/SRP011999/SRS514981/SRX391751/SRR1049435/SRR1049435.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft4A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.4A-01D	DNA	EFO	SRS516024	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_D05	SRX393078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.4A-01D GS02046-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70950-FS3_L01.bam	SRR1051251	@dbgap@:reads/SRP011999/SRS516024/SRX393078/SRR1051251/SRR1051251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft5A.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.5A-01D	DNA	EFO	SRS516441	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02046-CLS_E05	SRX393472	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.5A-01D GS02046-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71146-FS3_L01.bam	SRR1051745	@dbgap@:reads/SRP011999/SRS516441/SRX393472/SRR1051745/SRR1051745.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft8B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft8B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.8B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.8B-01D	DNA	EFO	SRS513612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A05	SRX390067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.8B-01D GS02045-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70224-FS3_L01.bam	SRR1047314	@dbgap@:reads/SRP011999/SRS513612/SRX390067/SRR1047314/SRR1047314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft8B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft8B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft10B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft10B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.10B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.10B-01D	DNA	EFO	SRS514864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F04	SRX391630	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.10B-01D GS02045-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70223-FS3_L01.bam	SRR1049149	@dbgap@:reads/SRP011999/SRS514864/SRX391630/SRR1049149/SRR1049149.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft10B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft10B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft12B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft12B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.12B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.12B-01D	DNA	EFO	SRS513618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G04	SRX390072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.12B-01D GS02045-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70227-FS3_L01.bam	SRR1047434	@dbgap@:reads/SRP011999/SRS513618/SRX390072/SRR1047434/SRR1047434.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft12B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft12B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft13B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft13B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.13B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.13B-01D	DNA	EFO	SRS513656	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B05	SRX390110	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.13B-01D GS02045-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70322-FS3_L01.bam	SRR1047451	@dbgap@:reads/SRP011999/SRS513656/SRX390110/SRR1047451/SRR1047451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft13B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft13B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft15B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft15B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.15B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.15B-01D	DNA	EFO	SRS513615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H04	SRX390069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.15B-01D GS02045-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70225-FS3_L01.bam	SRR1047425	@dbgap@:reads/SRP011999/SRS513615/SRX390069/SRR1047425/SRR1047425.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft15B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft15B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALLSD_NormalVsXenograft17B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALLSD_NormalVsXenograft17B.png	4			
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALLSD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALLSD-60.17B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALLSD-60.17B-01D	DNA	EFO	SRS513619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C05	SRX390073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALLSD-60.17B-01D GS02045-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70229-FS3_L03.bam	SRR1047441	@dbgap@:reads/SRP011999/SRS513619/SRX390073/SRR1047441/SRR1047441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALLSD_NormalVsXenograft17B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALLSD_NormalVsXenograft17B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-09A-01D	DNA	EFO	SRS502549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D09	SRX377742	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-09A-01D GS02031-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69100-FS3_L01.bam	SRR1029981	@dbgap@:reads/SRP011999/SRS502549/SRX377742/SRR1029981/SRR1029981.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsPrimary.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-14A-01D	DNA	EFO	SRS501336	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E09	SRX375657	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-14A-01D GS02031-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69101-FS3_L01.bam	SRR1028211	@dbgap@:reads/SRP011999/SRS501336/SRX375657/SRR1028211/SRR1028211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1A-01D	DNA	EFO	SRS509979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_B05	SRX385922	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1A-01D GS02040-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70946-FS3_L01.bam	SRR1041565	@dbgap@:reads/SRP011999/SRS509979/SRX385922/SRR1041565/SRR1041565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft1B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.1B-01D	DNA	EFO	SRS503452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_F06	SRX378885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.1B-01D GS02040-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65956-FS3_L01.bam	SRR1032098	@dbgap@:reads/SRP011999/SRS503452/SRX378885/SRR1032098/SRR1032098.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft2A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.2A-01D	DNA	EFO	SRS504708	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A03	SRX380255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.2A-01D GS02039-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69610-FS3_L01.bam	SRR1033630	@dbgap@:reads/SRP011999/SRS504708/SRX380255/SRR1033630/SRR1033630.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft3A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.3A-01D	DNA	EFO	SRS506980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B03	SRX382849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.3A-01D GS02039-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68974-FS3_L01.bam	SRR1037153	@dbgap@:reads/SRP011999/SRS506980/SRX382849/SRR1037153/SRR1037153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4A-01D	DNA	EFO	SRS506982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C03	SRX382850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4A-01D GS02039-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68973-FS3_L01.bam	SRR1037161	@dbgap@:reads/SRP011999/SRS506982/SRX382850/SRR1037161/SRR1037161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft4B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft4B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.4B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.4B-01D	DNA	EFO	SRS507065	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D03	SRX382950	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.4B-01D GS02039-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68972-FS3_L01.bam	SRR1037347	@dbgap@:reads/SRP011999/SRS507065/SRX382950/SRR1037347/SRR1037347.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft4B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft4B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5A.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5A-01D	DNA	EFO	SRS507142	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E03	SRX383043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5A-01D GS02039-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68971-FS3_L01.bam	SRR1037494	@dbgap@:reads/SRP011999/SRS507142/SRX383043/SRR1037494/SRR1037494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft5B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.5B-01D	DNA	EFO	SRS507137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F03	SRX383031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.5B-01D GS02039-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68994-FS3_L01.bam	SRR1037478	@dbgap@:reads/SRP011999/SRS507137/SRX383031/SRR1037478/SRR1037478.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALNTB_NormalVsXenograft6B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALNTB_NormalVsXenograft6B.png	4			
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALNTB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALNTB-60.6B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALNTB-60.6B-01D	DNA	EFO	SRS507108	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G03	SRX382999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALNTB-60.6B-01D GS02039-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68992-FS3_L01.bam	SRR1037413	@dbgap@:reads/SRP011999/SRS507108/SRX382999/SRR1037413/SRR1037413.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALNTB_NormalVsXenograft6B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALNTB_NormalVsXenograft6B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-09A-01D	DNA	EFO	SRS501333	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F09	SRX375652	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-09A-01D GS02031-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69102-FS3_L01.bam	SRR1028200	@dbgap@:reads/SRP011999/SRS501333/SRX375652/SRR1028200/SRR1028200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsPrimary.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-14B-01D	DNA	EFO	SRS502547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G09	SRX377740	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-14B-01D GS02031-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69103-FS3_L01.bam	SRR1029973	@dbgap@:reads/SRP011999/SRS502547/SRX377740/SRR1029973/SRR1029973.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_B10	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02064-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1A-01D	DNA	EFO	SRS518080	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H03	SRX397127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1A-01D GS02039-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71652-FS3_L01.bam	SRR1056375	@dbgap@:reads/SRP011999/SRS518080/SRX397127/SRR1056375/SRR1056375.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft1B.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.1B-01D	DNA	EFO	SRS507105	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A04	SRX382996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.1B-01D GS02039-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69263-FS3_L01.bam	SRR1037377	@dbgap@:reads/SRP011999/SRS507105/SRX382996/SRR1037377/SRR1037377.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft2A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.2A-01D	DNA	EFO	SRS507068	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C04	SRX382958	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.2A-01D GS02039-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69024-FS3_L01.bam	SRR1037367	@dbgap@:reads/SRP011999/SRS507068/SRX382958/SRR1037367/SRR1037367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft3A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.3A-01D	DNA	EFO	SRS506979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D04	SRX382848	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.3A-01D GS02039-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69429-FS3_L01.bam	SRR1037146	@dbgap@:reads/SRP011999/SRS506979/SRX382848/SRR1037146/SRR1037146.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALTWS_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALTWS_NormalVsXenograft4A.png	4			
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALTWS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PALTWS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALTWS-60.4A-01D	DNA	EFO	SRS507008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E04	SRX382870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALTWS-60.4A-01D GS02039-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70947-FS3_L01.bam	SRR1037218	@dbgap@:reads/SRP011999/SRS507008/SRX382870/SRR1037218/SRR1037218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALTWS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALTWS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALUAH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-03A-01D	DNA	EFO	SRS118031	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_G03	SRX130201	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-03A-01D GS00660-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17561-FS3_L01.bam	SRR446183	@dbgap@:reads/SRP011998/SRS118031/SRX130201/SRR446183/SRR446183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALUAH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALUAH_NormalVsPrimary.png	4			
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALUAH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALUAH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALUAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALUAH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALUAH-14A-01D	DNA	EFO	SRS118032	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_A05	SRX130200	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALUAH-14A-01D GS00660-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS18153-FS3_L01.bam	SRR446191	@dbgap@:reads/SRP011998/SRS118032/SRX130200/SRR446191/SRR446191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALULW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-03A-01D	DNA	EFO	SRS118033	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-03A-01D GS00660-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_D04	SRX130072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-03A-01D GS00660-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17697-FS3_L01.bam	SRR445869	@dbgap@:reads/SRP011998/SRS118033/SRX130072/SRR445869/SRR445869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALULW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALULW_NormalVsPrimary.png	4			
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALULW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALULW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALULW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALULW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALULW-14A-01D	DNA	EFO	SRS118034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALULW-14A-01D GS00660-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_F05	SRX130071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALULW-14A-01D GS00660-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17558-FS3_L01.bam	SRR445877	@dbgap@:reads/SRP011998/SRS118034/SRX130071/SRR445877/SRR445877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALZVV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-03A-01D	DNA	EFO	SRS118035	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_H03	SRX128711	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-03A-01D GS00660-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17549-FS3_L01.bam	SRR443411	@dbgap@:reads/SRP011998/SRS118035/SRX128711/SRR443411/SRR443411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PALZVV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PALZVV_NormalVsPrimary.png	4			
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PALZVV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PALZVV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PALZVV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PALZVV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PALZVV-14A-01D	DNA	EFO	SRS118036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00660-CLS_B05	SRX128710	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PALZVV-14A-01D GS00660-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS17909-FS3_L01.bam	SRR443419	@dbgap@:reads/SRP011998/SRS118036/SRX128710/SRR443419/SRR443419.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-09A-01D	DNA	EFO	SRS511150	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B11	SRX387249	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-09A-01D GS02039-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L01.bam	SRR1043154	@dbgap@:reads/SRP011999/SRS511150/SRX387249/SRR1043154/SRR1043154.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft8A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft9A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft10A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsPrimary.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-14A-01D	DNA	EFO	SRS511591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C11	SRX387693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-14A-01D GS02039-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70332-FS3_L03.bam	SRR1043751	@dbgap@:reads/SRP011999/SRS511591/SRX387693/SRR1043751/SRR1043751.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1A-01D	DNA	EFO	SRS502947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_A05	SRX378152	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1A-01D GS02040-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69185-FS3_L01.bam	SRR1030542	@dbgap@:reads/SRP011999/SRS502947/SRX378152/SRR1030542/SRR1030542.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_E09	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02064-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft1B.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.1B-01D	DNA	EFO	SRS517763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F04	SRX396783	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.1B-01D GS02039-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71651-FS3_L01.bam	SRR1055935	@dbgap@:reads/SRP011999/SRS517763/SRX396783/SRR1055935/SRR1055935.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft2A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.2A-01D	DNA	EFO	SRS502946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_D05	SRX378151	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.2A-01D GS02040-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69392-FS3_L01.bam	SRR1030534	@dbgap@:reads/SRP011999/SRS502946/SRX378151/SRR1030534/SRR1030534.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft3A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.3A-01D	DNA	EFO	SRS502954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_E05	SRX378159	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.3A-01D GS02040-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69393-FS3_L01.bam	SRR1030587	@dbgap@:reads/SRP011999/SRS502954/SRX378159/SRR1030587/SRR1030587.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft4A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.4A-01D	DNA	EFO	SRS509608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G04	SRX385498	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.4A-01D GS02039-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69233-FS3_L01.bam	SRR1041027	@dbgap@:reads/SRP011999/SRS509608/SRX385498/SRR1041027/SRR1041027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft5A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.5A-01D	DNA	EFO	SRS507478	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H04	SRX383399	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.5A-01D GS02039-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69232-FS3_L01.bam	SRR1037887	@dbgap@:reads/SRP011999/SRS507478/SRX383399/SRR1037887/SRR1037887.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft6A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.6A-01D	DNA	EFO	SRS507064	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A05	SRX382929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.6A-01D GS02039-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69264-FS3_L01.bam	SRR1037319	@dbgap@:reads/SRP011999/SRS507064/SRX382929/SRR1037319/SRR1037319.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft7A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.7A-01D	DNA	EFO	SRS507039	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B05	SRX382904	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.7A-01D GS02039-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69231-FS3_L01.bam	SRR1037288	@dbgap@:reads/SRP011999/SRS507039/SRX382904/SRR1037288/SRR1037288.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft8A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft8A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.8A-01D	DNA	EFO	SRS507038	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C05	SRX382903	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.8A-01D GS02039-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67480-FS3_L01.bam	SRR1037281	@dbgap@:reads/SRP011999/SRS507038/SRX382903/SRR1037281/SRR1037281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft9A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft9A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.9A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.9A-01D	DNA	EFO	SRS507037	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D05	SRX382902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.9A-01D GS02039-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67482-FS3_L01.bam	SRR1037274	@dbgap@:reads/SRP011999/SRS507037/SRX382902/SRR1037274/SRR1037274.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft9A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft9A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDKS_NormalVsXenograft10A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDKS_NormalVsXenograft10A.png	4			
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDKS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDKS-60.10A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDKS-60.10A-01D	DNA	EFO	SRS507066	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E05	SRX382951	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDKS-60.10A-01D GS02039-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67479-FS3_L01.bam	SRR1037354	@dbgap@:reads/SRP011999/SRS507066/SRX382951/SRR1037354/SRR1037354.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDKS_NormalVsXenograft10A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDKS_NormalVsXenograft10A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-09A-01D	DNA	EFO	SRS502552	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H09	SRX377748	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-09A-01D GS02031-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69104-FS3_L01.bam	SRR1030004	@dbgap@:reads/SRP011999/SRS502552/SRX377748/SRR1030004/SRR1030004.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAMDRM-14A-01D HS1577 library	PAIRED	GENOMIC	WGS	RANDOM		HS1577	SRX060124	bcgsc.ca:Protocol:WGS-Sequence-Illumina-GAIIx:01	BCCA		TARGET-10-PAMDRM-14A-01D HS1577 run	sequencing assay	EFO	150	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Bustard 1.5.0	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	HS1577.bam	SRR457654	@dbgap@:reads/SRP011998/SRS190004/SRX060124/SRR457654/SRR457654.sra	2	GRCh37		bcgsc.ca:Protocol:WGS-VariantCall:01		HS1577_4_lanes_dupsFlagged.bam.varFilter.0.1.13.snps.anno.maf.txt	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft8A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft11B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsPrimary.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000463	TARGET-10-PAMDRM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-14A-01D	DNA	EFO	SRS190004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A10	SRX377746	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-14A-01D GS02031-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68207-FS3_L01.bam	SRR1029995	@dbgap@:reads/SRP011998/SRS190004/SRX377746/SRR1029995/SRR1029995.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1A-01D	DNA	EFO	SRS502951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_C05	SRX378156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1A-01D GS02040-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67834-FS3_L01.bam	SRR1030565	@dbgap@:reads/SRP011999/SRS502951/SRX378156/SRR1030565/SRR1030565.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft1B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.1B-01D	DNA	EFO	SRS507351	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F05	SRX383237	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.1B-01D GS02039-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67478-FS3_L01.bam	SRR1037710	@dbgap@:reads/SRP011999/SRS507351/SRX383237/SRR1037710/SRR1037710.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft2A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.2A-01D	DNA	EFO	SRS507036	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G05	SRX382901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.2A-01D GS02039-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67476-FS3_L01.bam	SRR1037267	@dbgap@:reads/SRP011999/SRS507036/SRX382901/SRR1037267/SRR1037267.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3A-01D	DNA	EFO	SRS507771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H05	SRX383812	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3A-01D GS02039-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67474-FS3_L01.bam	SRR1038303	@dbgap@:reads/SRP011999/SRS507771/SRX383812/SRR1038303/SRR1038303.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft3B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.3B-01D	DNA	EFO	SRS509361	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A06	SRX385205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.3B-01D GS02039-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69265-FS3_L01.bam	SRR1040462	@dbgap@:reads/SRP011999/SRS509361/SRX385205/SRR1040462/SRR1040462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft4A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.4A-01D	DNA	EFO	SRS509340	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B06	SRX385183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.4A-01D GS02039-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67473-FS3_L01.bam	SRR1040407	@dbgap@:reads/SRP011999/SRS509340/SRX385183/SRR1040407/SRR1040407.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft5A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5A-01D	DNA	EFO	SRS509363	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C06	SRX385207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5A-01D GS02039-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67294-FS3_L01.bam	SRR1040471	@dbgap@:reads/SRP011999/SRS509363/SRX385207/SRR1040471/SRR1040471.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft5B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.5B-01D	DNA	EFO	SRS509343	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D06	SRX385186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.5B-01D GS02039-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67293-FS3_L01.bam	SRR1040416	@dbgap@:reads/SRP011999/SRS509343/SRX385186/SRR1040416/SRR1040416.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft6A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft6A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.6A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.6A-01D	DNA	EFO	SRS509348	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E06	SRX385192	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.6A-01D GS02039-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68804-FS3_L01.bam	SRR1040431	@dbgap@:reads/SRP011999/SRS509348/SRX385192/SRR1040431/SRR1040431.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft6A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft6A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft7A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7A-01D	DNA	EFO	SRS509352	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F06	SRX385196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7A-01D GS02039-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67392-FS3_L01.bam	SRR1040440	@dbgap@:reads/SRP011999/SRS509352/SRX385196/SRR1040440/SRR1040440.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft7B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.7B-01D	DNA	EFO	SRS508862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G06	SRX384663	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.7B-01D GS02039-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69395-FS3_L01.bam	SRR1039847	@dbgap@:reads/SRP011999/SRS508862/SRX384663/SRR1039847/SRR1039847.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft8A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft8A.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.8A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.8A-01D	DNA	EFO	SRS509984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H06	SRX385927	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.8A-01D GS02039-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69164-FS3_L01.bam	SRR1041574	@dbgap@:reads/SRP011999/SRS509984/SRX385927/SRR1041574/SRR1041574.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft8A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft8A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft9B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft9B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.9B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.9B-01D	DNA	EFO	SRS509397	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A07	SRX385255	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.9B-01D GS02039-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69266-FS3_L01.bam	SRR1040532	@dbgap@:reads/SRP011999/SRS509397/SRX385255/SRR1040532/SRR1040532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft9B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft9B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMDRM_NormalVsXenograft11B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMDRM_NormalVsXenograft11B.png	4			
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMDRM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMDRM-60.11B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMDRM-60.11B-01D	DNA	EFO	SRS509373	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B07	SRX385219	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMDRM-60.11B-01D GS02039-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69163-FS3_L01.bam	SRR1040479	@dbgap@:reads/SRP011999/SRS509373/SRX385219/SRR1040479/SRR1040479.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMDRM_NormalVsXenograft11B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMDRM_NormalVsXenograft11B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-09A-01D	DNA	EFO	SRS510293	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D11	SRX386274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-09A-01D GS02039-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70046-FS3_L01.bam	SRR1041922	@dbgap@:reads/SRP011999/SRS510293/SRX386274/SRR1041922/SRR1041922.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft6C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft8C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsPrimary.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-14A-01D	DNA	EFO	SRS511112	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E11	SRX387208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-14A-01D GS02039-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70045-FS3_L01.bam	SRR1043071	@dbgap@:reads/SRP011999/SRS511112/SRX387208/SRR1043071/SRR1043071.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft1C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.1C-01D	DNA	EFO	SRS510304	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C07	SRX386286	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.1C-01D GS02039-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70427-FS3_L01.bam	SRR1041945	@dbgap@:reads/SRP011999/SRS510304/SRX386286/SRR1041945/SRR1041945.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft2C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.2C-01D	DNA	EFO	SRS509612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D07	SRX385503	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.2C-01D GS02039-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69161-FS3_L01.bam	SRR1041057	@dbgap@:reads/SRP011999/SRS509612/SRX385503/SRR1041057/SRR1041057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft6C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft6C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.6C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.6C-01D	DNA	EFO	SRS509377	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E07	SRX385223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.6C-01D GS02039-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69160-FS3_L01.bam	SRR1040488	@dbgap@:reads/SRP011999/SRS509377/SRX385223/SRR1040488/SRR1040488.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft6C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft6C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft8C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft8C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.8C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.8C-01D	DNA	EFO	SRS509607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F07	SRX385497	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.8C-01D GS02039-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69084-FS3_L01.bam	SRR1041020	@dbgap@:reads/SRP011999/SRS509607/SRX385497/SRR1041020/SRR1041020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft8C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft8C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMKZB_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMKZB_NormalVsXenograft11C.png	4			
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMKZB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMKZB-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMKZB-60.11C-01D	DNA	EFO	SRS509383	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H07	SRX385231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMKZB-60.11C-01D GS02039-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67301-FS3_L01.bam	SRR1040498	@dbgap@:reads/SRP011999/SRS509383/SRX385231/SRR1040498/SRR1040498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMKZB_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMKZB_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMXHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-09B-01D	DNA	EFO	SRS489868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A06	SRX363140	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-09B-01D GS01996-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64729-FS3_L01.bam	SRR1008292	@dbgap@:reads/SRP011999/SRS489868/SRX363140/SRR1008292/SRR1008292.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMXHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXHJ_NormalVsPrimary.png	4			
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMXHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXHJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXHJ-14A-01D	DNA	EFO	SRS489867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D08	SRX363139	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXHJ-14A-01D GS01996-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64918-FS3_L01.bam	SRR1008299	@dbgap@:reads/SRP011999/SRS489867/SRX363139/SRR1008299/SRR1008299.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMXSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-09A-01D	DNA	EFO	SRS489649	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_C12	SRX362893	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-09A-01D GS01986-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64024-FS3_L01.bam	SRR1006507	@dbgap@:reads/SRP011999/SRS489649/SRX362893/SRR1006507/SRR1006507.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAMXSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAMXSP_NormalVsPrimary.png	4			
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAMXSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAMXSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAMXSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAMXSP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAMXSP-10A-01D	DNA	EFO	SRS489648	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_D12	SRX362892	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAMXSP-10A-01D GS01986-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63117-FS3_L01.bam	SRR1006515	@dbgap@:reads/SRP011999/SRS489648/SRX362892/SRR1006515/SRR1006515.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANATY-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANATY.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANATY-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANATY.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANATY-09A-01D.indel.vcf	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANATY-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANATY-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-09A-01D	DNA	EFO	SRS1761333	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-09A-01D A59116 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59116	SRX2241920	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANATY-09A-01D A59116 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59116_3_lanes_dupsFlagged.bam	SRR4419552	@dbgap@:reads/SRP011999/SRS1761333/SRX2241920/SRR4419552/SRR4419552.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANATY-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANATY-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANATY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANATY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANATY-10A-01D	DNA	EFO	SRS1761260	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANATY-10A-01D A59226 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59226	SRX2241846	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANATY-10A-01D A59226 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59226_2_lanes_dupsFlagged.bam	SRR4419496	@dbgap@:reads/SRP011999/SRS1761260/SRX2241846/SRR4419496/SRR4419496.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANATY-09A-01D_TARGET-10-PANATY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANATY.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANCVR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-03A-01D	DNA	EFO	SRS270502	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F02	SRX131877	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-03A-01D GS00869-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37982-FS3_L01.bam	SRR449228	@dbgap@:reads/SRP011999/SRS270502/SRX131877/SRR449228/SRR449228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANCVR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-04A-01D	DNA	EFO	SRS270503	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F09	SRX131878	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-04A-01D GS00869-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37981-FS3_L01.bam	SRR449220	@dbgap@:reads/SRP011999/SRS270503/SRX131878/SRR449220/SRR449220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANCVR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANCVR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsPrimary.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANCVR_NormalVsRecurrent.png	4			
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANCVR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANCVR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANCVR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANCVR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANCVR-14A-01D	DNA	EFO	SRS270504	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C11	SRX131876	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANCVR-14A-01D GS00869-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37748-FS3_L01.bam	SRR449236	@dbgap@:reads/SRP011999/SRS270504/SRX131876/SRR449236/SRR449236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANDBX-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANDBX.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANDBX-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANDBX.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANDBX-09A-01D.indel.vcf	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANDBX-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANDBX-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-09A-01D	DNA	EFO	SRS1761290	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-09A-01D A59117 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59117	SRX2241876	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANDBX-09A-01D A59117 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59117_3_lanes_dupsFlagged.bam	SRR4419461	@dbgap@:reads/SRP011999/SRS1761290/SRX2241876/SRR4419461/SRR4419461.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANDBX-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANDBX-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANDBX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDBX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDBX-10A-01D	DNA	EFO	SRS1761263	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANDBX-10A-01D A59227 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59227	SRX2241849	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANDBX-10A-01D A59227 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59227_2_lanes_dupsFlagged.bam	SRR4419520	@dbgap@:reads/SRP011999/SRS1761263/SRX2241849/SRR4419520/SRR4419520.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANDBX-09A-01D_TARGET-10-PANDBX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANDBX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANDWE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-03A-01D	DNA	EFO	SRS300839	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B05	SRX176156	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-03A-01D GS01042-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48680-FS3_L01.bam	SRR537200	@dbgap@:reads/SRP011999/SRS300839/SRX176156/SRR537200/SRR537200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANDWE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-04A-01D	DNA	EFO	SRS300840	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D05	SRX176157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-04A-01D GS01042-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48725-FS3_L01.bam	SRR537193	@dbgap@:reads/SRP011999/SRS300840/SRX176157/SRR537193/SRR537193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANDWE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANDWE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsPrimary.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANDWE_NormalVsRecurrent.png	4			
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANDWE-14A-01D	DNA	EFO	SRS300841	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C05	SRX176155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANDWE-14A-01D GS01042-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48681-FS3_L01.bam	SRR537207	@dbgap@:reads/SRP011999/SRS300841/SRX176155/SRR537207/SRR537207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEBL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-03A-01D	DNA	EFO	SRS489853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A09	SRX363124	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-03A-01D GS01997-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64875-FS3_L01.bam	SRR1008183	@dbgap@:reads/SRP011999/SRS489853/SRX363124/SRR1008183/SRR1008183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEBL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEBL_NormalVsPrimary.png	4			
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEBL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEBL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEBL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEBL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEBL-14A-01D	DNA	EFO	SRS489851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C09	SRX363123	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEBL-14A-01D GS01997-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64901-FS3_L01.bam	SRR1008190	@dbgap@:reads/SRP011999/SRS489851/SRX363123/SRR1008190/SRR1008190.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEPX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-03A-01D	DNA	EFO	SRS373604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_D12	SRX202105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-03A-01D GS01070-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51993-FS3_L01.bam	SRR610168	@dbgap@:reads/SRP011999/SRS373604/SRX202105/SRR610168/SRR610168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEPX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEPX_NormalVsPrimary.png	4			
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEPX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEPX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEPX-14A-01D	DNA	EFO	SRS373603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_E12	SRX202104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEPX-14A-01D GS01070-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS51992-FS3_L01.bam	SRR610175	@dbgap@:reads/SRP011999/SRS373603/SRX202104/SRR610175/SRR610175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-09A-01D	DNA	EFO	SRS489776	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E08	SRX363040	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-09A-01D GS01996-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64728-FS3_L01.bam	SRR1007604	@dbgap@:reads/SRP011999/SRS489776/SRX363040/SRR1007604/SRR1007604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANEUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANEUH_NormalVsPrimary.png	4			
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANEUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANEUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANEUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANEUH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANEUH-14A-01D	DNA	EFO	SRS489775	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F08	SRX363039	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANEUH-14A-01D GS01996-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64917-FS3_L01.bam	SRR1007612	@dbgap@:reads/SRP011999/SRS489775/SRX363039/SRR1007612/SRR1007612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANFNZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-09A-01D	DNA	EFO	SRS489811	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E06	SRX363075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-09A-01D GS01996-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L03.bam	SRR1007845	@dbgap@:reads/SRP011999/SRS489811/SRX363075/SRR1007845/SRR1007845.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANFNZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANFNZ_NormalVsPrimary.png	4			
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANFNZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANFNZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANFNZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANFNZ-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANFNZ-14B-01D	DNA	EFO	SRS489810	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C05	SRX363074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANFNZ-14B-01D GS01996-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64529-FS3_L01.bam	SRR1007852	@dbgap@:reads/SRP011999/SRS489810/SRX363074/SRR1007852/SRR1007852.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANGIF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-09A-01D	DNA	EFO	SRS300842	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G06	SRX160072	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-09A-01D GS01043-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L03.bam	SRR521672	@dbgap@:reads/SRP011999/SRS300842/SRX160072/SRR521672/SRR521672.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANGIF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANGIF_NormalVsPrimary.png	4			
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANGIF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANGIF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANGIF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANGIF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANGIF-14A-01D	DNA	EFO	SRS300843	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H06	SRX160071	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANGIF-14A-01D GS01043-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48965-FS3_L01.bam	SRR521679	@dbgap@:reads/SRP011999/SRS300843/SRX160071/SRR521679/SRR521679.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANIEU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-09A-01D	DNA	EFO	SRS300844	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A07	SRX160074	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-09A-01D GS01043-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48963-FS3_L01.bam	SRR521686	@dbgap@:reads/SRP011999/SRS300844/SRX160074/SRR521686/SRR521686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANIEU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANIEU_NormalVsPrimary.png	4			
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANIEU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANIEU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANIEU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANIEU-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANIEU-14A-01D	DNA	EFO	SRS300845	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B07	SRX160073	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANIEU-14A-01D GS01043-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48964-FS3_L01.bam	SRR521693	@dbgap@:reads/SRP011999/SRS300845/SRX160073/SRR521693/SRR521693.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANJPG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-03B-01D	DNA	EFO	SRS489813	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_B12	SRX363077	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-03B-01D GS01986-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63113-FS3_L01.bam	SRR1007859	@dbgap@:reads/SRP011999/SRS489813/SRX363077/SRR1007859/SRR1007859.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANJPG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJPG_NormalVsPrimary.png	4			
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANJPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJPG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJPG-14A-01D	DNA	EFO	SRS489812	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_A02	SRX363076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJPG-14A-01D GS01991-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64443-FS3_L01.bam	SRR1007866	@dbgap@:reads/SRP011999/SRS489812/SRX363076/SRR1007866/SRR1007866.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANJWJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-09A-01D	DNA	EFO	SRS300846	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C07	SRX159562	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-09A-01D GS01043-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48217-FS3_L01.bam	SRR520966	@dbgap@:reads/SRP011999/SRS300846/SRX159562/SRR520966/SRR520966.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANJWJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANJWJ_NormalVsPrimary.png	4			
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANJWJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANJWJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANJWJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANJWJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANJWJ-14A-01D	DNA	EFO	SRS300847	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E07	SRX159561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANJWJ-14A-01D GS01043-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48218-FS3_L01.bam	SRR520973	@dbgap@:reads/SRP011999/SRS300847/SRX159561/SRR520973/SRR520973.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKAK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-04A-01D	DNA	EFO	SRS270505	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_H03	SRX122206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-04A-01D GS00813-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37904-FS3_L01.bam	SRR413791	@dbgap@:reads/SRP011999/SRS270505/SRX122206/SRR413791/SRR413791.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKAK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-09A-01D	DNA	EFO	SRS270506	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_E07	SRX122207	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-09A-01D GS00813-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37905-FS3_L01.bam	SRR413785	@dbgap@:reads/SRP011999/SRS270506/SRX122207/SRR413785/SRR413785.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKAK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKAK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsPrimary.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKAK_NormalVsRecurrent.png	4			
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKAK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKAK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKAK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKAK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKAK-10A-01D	DNA	EFO	SRS270507	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00813-CLS_B06	SRX122205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKAK-10A-01D GS00813-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37841-FS3_L01.bam	SRR413799	@dbgap@:reads/SRP011999/SRS270507/SRX122205/SRR413799/SRR413799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKDT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-09A-01D	DNA	EFO	SRS489815	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F06	SRX363079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-09A-01D GS01996-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64530-FS3_L01.bam	SRR1007873	@dbgap@:reads/SRP011999/SRS489815/SRX363079/SRR1007873/SRR1007873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKDT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKDT_NormalVsPrimary.png	4			
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKDT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKDT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKDT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKDT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKDT-14A-01D	DNA	EFO	SRS489814	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G06	SRX363078	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKDT-14A-01D GS01996-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64531-FS3_L01.bam	SRR1007880	@dbgap@:reads/SRP011999/SRS489814/SRX363078/SRR1007880/SRR1007880.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-09A-01D	DNA	EFO	SRS489817	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H06	SRX363081	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-09A-01D GS01996-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64532-FS3_L01.bam	SRR1007888	@dbgap@:reads/SRP011999/SRS489817/SRX363081/SRR1007888/SRR1007888.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKGK_NormalVsPrimary.png	4			
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKGK-14A-01D	DNA	EFO	SRS489816	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A07	SRX363080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKGK-14A-01D GS01996-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64378-FS3_L01.bam	SRR1007895	@dbgap@:reads/SRP011999/SRS489816/SRX363080/SRR1007895/SRR1007895.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKMB_NormalVsPrimary09A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-09A-01D	DNA	EFO	SRS493310	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_B04	SRX367196	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-09A-01D GS01968-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62294-FS3_L01.bam	SRR1015799	@dbgap@:reads/SRP011999/SRS493310/SRX367196/SRR1015799/SRR1015799.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKMB_NormalVsPrimary03A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary03A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKMB_NormalVsPrimary09A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary03A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary03A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary03A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary03A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKMB_NormalVsPrimary09A.png	4			
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKMB_NormalVsPrimary09A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKMB_NormalVsPrimary09A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H12	SRX367195	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS02006-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66770-FS3_L01.bam	SRR1015806	@dbgap@:reads/SRP011999/SRS493311/SRX367195/SRR1015806/SRR1015806.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKMB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKMB-14A-01D	DNA	EFO	SRS493311	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKMB-14A-01D GS01968-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_C04	SRX367197	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKMB-14A-01D GS01968-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62293-FS3_L01.bam	SRR1015792	@dbgap@:reads/SRP011999/SRS493311/SRX367197/SRR1015792/SRR1015792.sra	2	GRCh37-lite											
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKRG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-03A-01D	DNA	EFO	SRS489836	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G08	SRX363104	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-03A-01D GS01996-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64916-FS3_L01.bam	SRR1008048	@dbgap@:reads/SRP011999/SRS489836/SRX363104/SRR1008048/SRR1008048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANKRG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANKRG_NormalVsPrimary.png	4			
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANKRG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANKRG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANKRG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANKRG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANKRG-14A-01D	DNA	EFO	SRS489835	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H08	SRX363103	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANKRG-14A-01D GS01996-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64915-FS3_L01.bam	SRR1008055	@dbgap@:reads/SRP011999/SRS489835/SRX363103/SRR1008055/SRR1008055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANLGK-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANLGK.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANLGK-03A-01D.indel.vcf	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANLGK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANLGK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-03A-01D	DNA	EFO	SRS1761301	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-03A-01D A59075 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59075	SRX2241887	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANLGK-03A-01D A59075 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59075_3_lanes_dupsFlagged.bam	SRR4419510	@dbgap@:reads/SRP011999/SRS1761301/SRX2241887/SRR4419510/SRR4419510.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANLGK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANLGK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANLGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLGK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLGK-10A-01D	DNA	EFO	SRS1761319	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANLGK-10A-01D A59185 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59185	SRX2241904	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PANLGK-10A-01D A59185 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59185_2_lanes_dupsFlagged.bam	SRR4419521	@dbgap@:reads/SRP011999/SRS1761319/SRX2241904/SRR4419521/SRR4419521.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANLGK-03A-01D_TARGET-10-PANLGK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANLGK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANLIC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-09B-01D	DNA	EFO	SRS489838	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01986-CLS_E12	SRX363106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-09B-01D GS01986-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63118-FS3_L01.bam	SRR1008062	@dbgap@:reads/SRP011999/SRS489838/SRX363106/SRR1008062/SRR1008062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANLIC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANLIC_NormalVsPrimary.png	4			
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANLIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANLIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANLIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANLIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANLIC-10A-01D	DNA	EFO	SRS489837	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01991-CLS_B02	SRX363105	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANLIC-10A-01D GS01991-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62520-FS3_L01.bam	SRR1008068	@dbgap@:reads/SRP011999/SRS489837/SRX363105/SRR1008068/SRR1008068.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANPJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-09B-01D	DNA	EFO	SRS489858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D05	SRX363130	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-09B-01D GS01996-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65061-FS3_L01.bam	SRR1008225	@dbgap@:reads/SRP011999/SRS489858/SRX363130/SRR1008225/SRR1008225.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANPJI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJI_NormalVsPrimary.png	4			
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANPJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJI-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJI-14A-01D	DNA	EFO	SRS489857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B07	SRX363129	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJI-14A-01D GS01996-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63506-FS3_L01.bam	SRR1008229	@dbgap@:reads/SRP011999/SRS489857/SRX363129/SRR1008229/SRR1008229.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANPJW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-09A-01D	DNA	EFO	SRS300848	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_A12	SRX170997	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-09A-01D GS01041-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49655-FS3_L01.bam	SRR527408	@dbgap@:reads/SRP011999/SRS300848/SRX170997/SRR527408/SRR527408.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANPJW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANPJW_NormalVsPrimary.png	4			
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANPJW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANPJW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANPJW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANPJW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANPJW-14A-01D	DNA	EFO	SRS300849	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01041-CLS_G12	SRX170996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANPJW-14A-01D GS01041-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47515-FS3_L01.bam	SRR527415	@dbgap@:reads/SRP011999/SRS300849/SRX170996/SRR527415/SRR527415.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-03A-01D	DNA	EFO	SRS489870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C07	SRX363142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-03A-01D GS01996-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65060-FS3_L01.bam	SRR1008306	@dbgap@:reads/SRP011999/SRS489870/SRX363142/SRR1008306/SRR1008306.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRAL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRAL_NormalVsPrimary.png	4			
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRAL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRAL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRAL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRAL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRAL-10A-01D	DNA	EFO	SRS489869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E07	SRX363141	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRAL-10A-01D GS01996-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65059-FS3_L01.bam	SRR1008314	@dbgap@:reads/SRP011999/SRS489869/SRX363141/SRR1008314/SRR1008314.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRDC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-03A-01D	DNA	EFO	SRS500387	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G02	SRX375025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-03A-01D GS02045-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70140-FS3_L01.bam	SRR1027451	@dbgap@:reads/SRP011999/SRS500387/SRX375025/SRR1027451/SRR1027451.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRDC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRDC_NormalVsPrimary.png	4			
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRDC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRDC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRDC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRDC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRDC-14A-01D	DNA	EFO	SRS500388	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H12	SRX375024	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRDC-14A-01D GS02045-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70138-FS3_L01.bam	SRR1027458	@dbgap@:reads/SRP011999/SRS500388/SRX375024/SRR1027458/SRR1027458.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRWG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-09B-01D	DNA	EFO	SRS489819	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F05	SRX363083	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-09B-01D GS01996-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65057-FS3_L01.bam	SRR1007902	@dbgap@:reads/SRP011999/SRS489819/SRX363083/SRR1007902/SRR1007902.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRWG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRWG_NormalVsPrimary.png	4			
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRWG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRWG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRWG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRWG-14A-01D	DNA	EFO	SRS489818	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G07	SRX363082	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRWG-14A-01D GS01996-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65056-FS3_L01.bam	SRR1007909	@dbgap@:reads/SRP011999/SRS489818/SRX363082/SRR1007909/SRR1007909.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRYM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-09A-01D	DNA	EFO	SRS489774	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A09	SRX363038	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-09A-01D GS01996-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64376-FS3_L01.bam	SRR1007589	@dbgap@:reads/SRP011999/SRS489774/SRX363038/SRR1007589/SRR1007589.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANRYM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANRYM_NormalVsPrimary.png	4			
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANRYM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANRYM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANRYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANRYM-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANRYM-14B-01D	DNA	EFO	SRS489773	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B06	SRX363037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANRYM-14B-01D GS01996-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64914-FS3_L01.bam	SRR1007597	@dbgap@:reads/SRP011999/SRS489773/SRX363037/SRR1007597/SRR1007597.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANSBK-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANSBK.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANSBK-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANSBK.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANSBK-03A-01D.indel.vcf	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANSBK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANSBK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-03A-01D	DNA	EFO	SRS1761294	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-03A-01D A59118 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59118	SRX2241880	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANSBK-03A-01D A59118 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59118_3_lanes_dupsFlagged.bam	SRR4419490	@dbgap@:reads/SRP011999/SRS1761294/SRX2241880/SRR4419490/SRR4419490.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANSBK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANSBK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANSBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBK-10A-01D	DNA	EFO	SRS1761340	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANSBK-10A-01D A59228 library	PAIRED	GENOMIC	WGS	RANDOM	438	A59228	SRX2241928	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANSBK-10A-01D A59228 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59228_2_lanes_dupsFlagged.bam	SRR4419533	@dbgap@:reads/SRP011999/SRS1761340/SRX2241928/SRR4419533/SRR4419533.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANSBK-03A-01D_TARGET-10-PANSBK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANSBK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSBR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-09A-01D	DNA	EFO	SRS300850	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F07	SRX160093	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-09A-01D GS01043-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48850-FS3_L01.bam	SRR521821	@dbgap@:reads/SRP011999/SRS300850/SRX160093/SRR521821/SRR521821.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSBR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSBR_NormalVsPrimary.png	4			
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSBR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSBR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSBR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSBR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSBR-14A-01D	DNA	EFO	SRS300851	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G07	SRX160092	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSBR-14A-01D GS01043-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48216-FS3_L01.bam	SRR521828	@dbgap@:reads/SRP011999/SRS300851/SRX160092/SRR521828/SRR521828.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSDA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-04A-01D	DNA	EFO	SRS270508	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G02	SRX131872	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-04A-01D GS00868-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37749-FS3_L01.bam	SRR449155	@dbgap@:reads/SRP011999/SRS270508/SRX131872/SRR449155/SRR449155.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSDA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-09A-01D	DNA	EFO	SRS270509	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E02	SRX131871	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-09A-01D GS00868-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37750-FS3_L01.bam	SRR449163	@dbgap@:reads/SRP011999/SRS270509/SRX131871/SRR449163/SRR449163.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSDA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSDA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsPrimary.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSDA_NormalVsRecurrent.png	4			
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSDA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSDA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSDA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSDA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSDA-14A-01D	DNA	EFO	SRS270510	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G10	SRX131870	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSDA-14A-01D GS00868-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37983-FS3_L01.bam	SRR449171	@dbgap@:reads/SRP011999/SRS270510/SRX131870/SRR449171/SRR449171.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-03A-01D	DNA	EFO	SRS502550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_B10	SRX377744	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-03A-01D GS02031-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67486-FS3_L01.bam	SRR1029988	@dbgap@:reads/SRP011999/SRS502550/SRX377744/SRR1029988/SRR1029988.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsPrimary.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-10A-01D	DNA	EFO	SRS502555	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C10	SRX377751	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-10A-01D GS02031-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67487-FS3_L01.bam	SRR1030020	@dbgap@:reads/SRP011999/SRS502555/SRX377751/SRR1030020/SRR1030020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft1A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.1A-01D	DNA	EFO	SRS502948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS02040-CLS_H04	SRX378153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.1A-01D GS02040-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66998-FS3_L01.bam	SRR1030550	@dbgap@:reads/SRP011999/SRS502948/SRX378153/SRR1030550/SRR1030550.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSFD_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSFD_NormalVsXenograft2A.png	4			
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSFD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSFD-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSFD-60.2A-01D	DNA	EFO	SRS510612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A08	SRX386586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSFD-60.2A-01D GS02039-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70948-FS3_L01.bam	SRR1042297	@dbgap@:reads/SRP011999/SRS510612/SRX386586/SRR1042297/SRR1042297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSFD_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSFD_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSHK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-04A-01D	DNA	EFO	SRS300852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A11	SRX184430	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-04A-01D GS01055-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50670-FS3_L01.bam	SRR559378	@dbgap@:reads/SRP011999/SRS300852/SRX184430/SRR559378/SRR559378.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSHK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-09A-01D	DNA	EFO	SRS300853	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C09	SRX184429	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-09A-01D GS01055-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50669-FS3_L01.bam	SRR559385	@dbgap@:reads/SRP011999/SRS300853/SRX184429/SRR559385/SRR559385.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSHK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSHK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsPrimary.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSHK_NormalVsRecurrent.png	4			
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSHK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSHK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSHK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSHK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSHK-14A-01D	DNA	EFO	SRS300854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H10	SRX184428	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSHK-14A-01D GS01055-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50671-FS3_L01.bam	SRR559392	@dbgap@:reads/SRP011999/SRS300854/SRX184428/SRR559392/SRR559392.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSIA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-09A-01D	DNA	EFO	SRS489771	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B09	SRX363036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-09A-01D GS01996-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64777-FS3_L01.bam	SRR1007575	@dbgap@:reads/SRP011999/SRS489771/SRX363036/SRR1007575/SRR1007575.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSIA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSIA_NormalVsPrimary.png	4			
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSIA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSIA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSIA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSIA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSIA-10A-01D	DNA	EFO	SRS489772	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C06	SRX363035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSIA-10A-01D GS01996-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64778-FS3_L01.bam	SRR1007582	@dbgap@:reads/SRP011999/SRS489772/SRX363035/SRR1007582/SRR1007582.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSPW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-09A-01D	DNA	EFO	SRS300855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H07	SRX160095	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-09A-01D GS01043-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L03.bam	SRR521836	@dbgap@:reads/SRP011999/SRS300855/SRX160095/SRR521836/SRR521836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSPW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSPW_NormalVsPrimary.png	4			
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSPW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSPW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSPW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSPW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSPW-10A-01D	DNA	EFO	SRS300856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A08	SRX160094	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSPW-10A-01D GS01043-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48846-FS3_L01.bam	SRR521843	@dbgap@:reads/SRP011999/SRS300856/SRX160094/SRR521843/SRR521843.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSUL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-09A-01D	DNA	EFO	SRS300857	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B08	SRX176588	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-09A-01D GS01043-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48823-FS3_L01.bam	SRR539113	@dbgap@:reads/SRP011999/SRS300857/SRX176588/SRR539113/SRR539113.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSUL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSUL_NormalVsPrimary.png	4			
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSUL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSUL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSUL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSUL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSUL-10A-01D	DNA	EFO	SRS300858	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C08	SRX176587	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSUL-10A-01D GS01043-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48845-FS3_L01.bam	SRR539120	@dbgap@:reads/SRP011999/SRS300858/SRX176587/SRR539120/SRR539120.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSXG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-03A-01D	DNA	EFO	SRS489770	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C09	SRX363034	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-03A-01D GS01996-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L01.bam	SRR1007561	@dbgap@:reads/SRP011999/SRS489770/SRX363034/SRR1007561/SRR1007561.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANSXG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANSXG_NormalVsPrimary.png	4			
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANSXG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANSXG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANSXG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANSXG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANSXG-14A-01D	DNA	EFO	SRS489769	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D09	SRX363033	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANSXG-14A-01D GS01996-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64776-FS3_L03.bam	SRR1007568	@dbgap@:reads/SRP011999/SRS489769/SRX363033/SRR1007568/SRR1007568.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANTTZ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANTTZ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANTTZ-09A-01D.indel.vcf	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANTTZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANTTZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-09A-01D	DNA	EFO	SRS1761299	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-09A-01D A59119 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59119	SRX2241885	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PANTTZ-09A-01D A59119 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59119_3_lanes_dupsFlagged.bam	SRR4419532	@dbgap@:reads/SRP011999/SRS1761299/SRX2241885/SRR4419532/SRR4419532.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANTTZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANTTZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANTTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANTTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANTTZ-10A-01D	DNA	EFO	SRS1761259	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANTTZ-10A-01D A59229 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59229	SRX2241845	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PANTTZ-10A-01D A59229 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59229_2_lanes_dupsFlagged.bam	SRR4419516	@dbgap@:reads/SRP011999/SRS1761259/SRX2241845/SRR4419516/SRR4419516.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANTTZ-09A-01D_TARGET-10-PANTTZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANTTZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-09A-01D	DNA	EFO	SRS300859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D08	SRX159564	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-09A-01D GS01042-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48957-FS3_L01.bam	SRR520980	@dbgap@:reads/SRP011999/SRS300859/SRX159564/SRR520980/SRR520980.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUHA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUHA_NormalVsPrimary.png	4			
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUHA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUHA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUHA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUHA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUHA-10A-01D	DNA	EFO	SRS300860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E08	SRX159563	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUHA-10A-01D GS01042-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48958-FS3_L01.bam	SRR520987	@dbgap@:reads/SRP011999/SRS300860/SRX159563/SRR520987/SRR520987.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUKN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-04A-01D	DNA	EFO	SRS300861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G03	SRX160700	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-04A-01D GS01042-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49140-FS3_L01.bam	SRR524494	@dbgap@:reads/SRP011999/SRS300861/SRX160700/SRR524494/SRR524494.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-09A-01D	DNA	EFO	SRS300862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E03	SRX160699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-09A-01D GS01042-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48142-FS3_L01.bam	SRR524501	@dbgap@:reads/SRP011999/SRS300862/SRX160699/SRR524501/SRR524501.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUKN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsPrimary.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUKN_NormalVsRecurrent.png	4			
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUKN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUKN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUKN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUKN-10A-01D	DNA	EFO	SRS300863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F03	SRX160698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUKN-10A-01D GS01042-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48143-FS3_L01.bam	SRR524509	@dbgap@:reads/SRP011999/SRS300863/SRX160698/SRR524509/SRR524509.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANURW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-09A-01D	DNA	EFO	SRS489798	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-09A-01D GS01997-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D10	SRX363062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-09A-01D GS01997-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64903-FS3_L01.bam	SRR1007756	@dbgap@:reads/SRP011999/SRS489798/SRX363062/SRR1007756/SRR1007756.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANURW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANURW_NormalVsPrimary.png	4			
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANURW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANURW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANURW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANURW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANURW-14A-01D	DNA	EFO	SRS489797	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANURW-14A-01D GS01997-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E10	SRX363061	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANURW-14A-01D GS01997-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64902-FS3_L01.bam	SRR1007763	@dbgap@:reads/SRP011999/SRS489797/SRX363061/SRR1007763/SRR1007763.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUSN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-09A-01D	DNA	EFO	SRS300864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H08	SRX176215	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-09A-01D GS01042-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L03.bam	SRR538036	@dbgap@:reads/SRP011999/SRS300864/SRX176215/SRR538036/SRR538036.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUSN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUSN_NormalVsPrimary.png	4			
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUSN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUSN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUSN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUSN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUSN-14A-01D	DNA	EFO	SRS300865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A09	SRX176214	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUSN-14A-01D GS01042-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48781-FS3_L01.bam	SRR538043	@dbgap@:reads/SRP011999/SRS300865/SRX176214/SRR538043/SRR538043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-09B-01D	DNA	EFO	SRS489821	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G05	SRX363085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-09B-01D GS01996-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64737-FS3_L01.bam	SRR1007916	@dbgap@:reads/SRP011999/SRS489821/SRX363085/SRR1007916/SRR1007916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANUUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANUUF_NormalVsPrimary.png	4			
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANUUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANUUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANUUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANUUF-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANUUF-14A-01D	DNA	EFO	SRS489820	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H07	SRX363084	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANUUF-14A-01D GS01996-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65055-FS3_L01.bam	SRR1007923	@dbgap@:reads/SRP011999/SRS489820/SRX363084/SRR1007923/SRR1007923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANVYR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-03A-01D	DNA	EFO	SRS300866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H03	SRX171005	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-03A-01D GS01042-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L01.bam	SRR527441	@dbgap@:reads/SRP011999/SRS300866/SRX171005/SRR527441/SRR527441.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANVYR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-04A-01D	DNA	EFO	SRS300867	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C04	SRX171004	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-04A-01D GS01042-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49138-FS3_L03.bam	SRR527448	@dbgap@:reads/SRP011999/SRS300867/SRX171004/SRR527448/SRR527448.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANVYR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANVYR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsPrimary.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANVYR_NormalVsRecurrent.png	4			
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANVYR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANVYR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANVYR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANVYR-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANVYR-14A-01D	DNA	EFO	SRS300868	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A04	SRX171003	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANVYR-14A-01D GS01042-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49139-FS3_L01.bam	SRR527455	@dbgap@:reads/SRP011999/SRS300868/SRX171003/SRR527455/SRR527455.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANWEZ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANWEZ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANWEZ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PANWEZ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PANWEZ-09A-01D.indel.vcf	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANWEZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANWEZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-09A-01D	DNA	EFO	SRS1761289	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-09A-01D A59090 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59090	SRX2241875	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PANWEZ-09A-01D A59090 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59090_3_lanes_dupsFlagged.bam	SRR4419486	@dbgap@:reads/SRP011999/SRS1761289/SRX2241875/SRR4419486/SRR4419486.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PANWEZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PANWEZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PANWEZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWEZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWEZ-10A-01D	DNA	EFO	SRS1761256	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PANWEZ-10A-01D A59200 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59200	SRX2241841	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PANWEZ-10A-01D A59200 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59200_2_lanes_dupsFlagged.bam	SRR4419514	@dbgap@:reads/SRP011999/SRS1761256/SRX2241841/SRR4419514/SRR4419514.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PANWEZ-09A-01D_TARGET-10-PANWEZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PANWEZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWFL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-09A-01D	DNA	EFO	SRS489768	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E09	SRX363032	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-09A-01D GS01996-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64779-FS3_L01.bam	SRR1007547	@dbgap@:reads/SRP011999/SRS489768/SRX363032/SRR1007547/SRR1007547.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWFL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWFL_NormalVsPrimary.png	4			
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWFL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWFL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWFL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWFL-14A-01D	DNA	EFO	SRS489767	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F09	SRX363031	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWFL-14A-01D GS01996-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64774-FS3_L01.bam	SRR1007554	@dbgap@:reads/SRP011999/SRS489767/SRX363031/SRR1007554/SRR1007554.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-04A-01D	DNA	EFO	SRS300869	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F07	SRX160102	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-04A-01D GS01042-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48875-FS3_L01.bam	SRR521882	@dbgap@:reads/SRP011999/SRS300869/SRX160102/SRR521882/SRR521882.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-09A-01D	DNA	EFO	SRS300870	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D07	SRX160101	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-09A-01D GS01042-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L03.bam	SRR521889	@dbgap@:reads/SRP011999/SRS300870/SRX160101/SRR521889/SRR521889.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsPrimary.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHJ_NormalVsRecurrent.png	4			
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHJ-10A-01D	DNA	EFO	SRS300871	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E07	SRX160100	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHJ-10A-01D GS01042-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48876-FS3_L01.bam	SRR521896	@dbgap@:reads/SRP011999/SRS300871/SRX160100/SRR521896/SRR521896.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-03A-01D	DNA	EFO	SRS489788	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A02	SRX363052	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-03A-01D GS01996-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64732-FS3_L01.bam	SRR1007689	@dbgap@:reads/SRP011999/SRS489788/SRX363052/SRR1007689/SRR1007689.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWHW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWHW_NormalVsPrimary.png	4			
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWHW-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWHW-14A-01D	DNA	EFO	SRS489787	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H10	SRX363051	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWHW-14A-01D GS01996-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64731-FS3_L01.bam	SRR1007694	@dbgap@:reads/SRP011999/SRS489787/SRX363051/SRR1007694/SRR1007694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-09B-01D	DNA	EFO	SRS502553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D10	SRX377749	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-09B-01D GS02031-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67488-FS3_L01.bam	SRR1030012	@dbgap@:reads/SRP011999/SRS502553/SRX377749/SRR1030012/SRR1030012.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsPrimary.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-10A-01D	DNA	EFO	SRS502546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E10	SRX377739	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-10A-01D GS02031-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67489-FS3_L01.bam	SRR1029966	@dbgap@:reads/SRP011999/SRS502546/SRX377739/SRR1029966/SRR1029966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft1C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.1C-01D	DNA	EFO	SRS510635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C09	SRX386610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.1C-01D GS02039-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L03.bam	SRR1042329	@dbgap@:reads/SRP011999/SRS510635/SRX386610/SRR1042329/SRR1042329.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft2C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.2C-01D	DNA	EFO	SRS510645	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D09	SRX386624	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.2C-01D GS02039-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69507-FS3_L01.bam	SRR1042367	@dbgap@:reads/SRP011999/SRS510645/SRX386624/SRR1042367/SRR1042367.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWJB_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWJB_NormalVsXenograft3C.png	4			
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWJB-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWJB-60.3C-01D	DNA	EFO	SRS510638	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E09	SRX386613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWJB-60.3C-01D GS02039-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69384-FS3_L01.bam	SRR1042338	@dbgap@:reads/SRP011999/SRS510638/SRX386613/SRR1042338/SRR1042338.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWJB_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWJB_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWVW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-09A-01D	DNA	EFO	SRS489766	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G09	SRX363030	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-09A-01D GS01996-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64923-FS3_L01.bam	SRR1007533	@dbgap@:reads/SRP011999/SRS489766/SRX363030/SRR1007533/SRR1007533.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWVW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWVW_NormalVsPrimary.png	4			
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWVW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWVW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWVW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWVW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWVW-10A-01D	DNA	EFO	SRS489765	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H09	SRX363029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWVW-10A-01D GS01996-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64922-FS3_L01.bam	SRR1007540	@dbgap@:reads/SRP011999/SRS489765/SRX363029/SRR1007540/SRR1007540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWYH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-09A-01D	DNA	EFO	SRS300872	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F08	SRX159556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-09A-01D GS01042-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48782-FS3_L01.bam	SRR520919	@dbgap@:reads/SRP011999/SRS300872/SRX159556/SRR520919/SRR520919.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWYH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYH_NormalVsPrimary.png	4			
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWYH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYH-10A-01D	DNA	EFO	SRS300873	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G08	SRX159555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYH-10A-01D GS01042-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48956-FS3_L01.bam	SRR520926	@dbgap@:reads/SRP011999/SRS300873/SRX159555/SRR520926/SRR520926.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-03A-01D	DNA	EFO	SRS489764	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A10	SRX363028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-03A-01D GS01996-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64921-FS3_L01.bam	SRR1007519	@dbgap@:reads/SRP011999/SRS489764/SRX363028/SRR1007519/SRR1007519.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANWYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANWYK_NormalVsPrimary.png	4			
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANWYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANWYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANWYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANWYK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANWYK-14A-01D	DNA	EFO	SRS489763	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B10	SRX363027	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANWYK-14A-01D GS01996-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65064-FS3_L01.bam	SRR1007526	@dbgap@:reads/SRP011999/SRS489763/SRX363027/SRR1007526/SRR1007526.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXDB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-03A-01D	DNA	EFO	SRS489778	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A11	SRX363042	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-03A-01D GS01996-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L01.bam	SRR1007619	@dbgap@:reads/SRP011999/SRS489778/SRX363042/SRR1007619/SRR1007619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXDB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDB_NormalVsPrimary.png	4			
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXDB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDB-14A-01D	DNA	EFO	SRS489777	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C11	SRX363041	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDB-14A-01D GS01996-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64730-FS3_L03.bam	SRR1007626	@dbgap@:reads/SRP011999/SRS489777/SRX363041/SRR1007626/SRR1007626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXDR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-09A-01D	DNA	EFO	SRS489786	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D11	SRX363050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-09A-01D GS01996-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64595-FS3_L01.bam	SRR1007675	@dbgap@:reads/SRP011999/SRS489786/SRX363050/SRR1007675/SRR1007675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXDR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXDR_NormalVsPrimary.png	4			
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXDR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXDR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXDR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXDR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXDR-10A-01D	DNA	EFO	SRS489785	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E11	SRX363049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXDR-10A-01D GS01996-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64594-FS3_L01.bam	SRR1007682	@dbgap@:reads/SRP011999/SRS489785/SRX363049/SRR1007682/SRR1007682.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXPE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-03A-01D	DNA	EFO	SRS300874	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B08	SRX176560	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-03A-01D GS01055-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50639-FS3_L01.bam	SRR538919	@dbgap@:reads/SRP011999/SRS300874/SRX176560/SRR538919/SRR538919.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXPE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-04A-01D	DNA	EFO	SRS300875	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A10	SRX176561	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-04A-01D GS01055-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50640-FS3_L01.bam	SRR538912	@dbgap@:reads/SRP011999/SRS300875/SRX176561/SRR538912/SRR538912.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXPE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANXPE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsPrimary.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANXPE_NormalVsRecurrent.png	4			
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANXPE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANXPE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANXPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANXPE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANXPE-10A-01D	DNA	EFO	SRS300876	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C08	SRX176559	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANXPE-10A-01D GS01055-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50616-FS3_L01.bam	SRR538926	@dbgap@:reads/SRP011999/SRS300876/SRX176559/SRR538926/SRR538926.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-09A-01D	DNA	EFO	SRS489866	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C10	SRX363138	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-09A-01D GS01996-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L01.bam	SRR1008278	@dbgap@:reads/SRP011999/SRS489866/SRX363138/SRR1008278/SRR1008278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYEJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYEJ_NormalVsPrimary.png	4			
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYEJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYEJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYEJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYEJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYEJ-14A-01D	DNA	EFO	SRS489865	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D10	SRX363137	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYEJ-14A-01D GS01996-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65063-FS3_L03.bam	SRR1008285	@dbgap@:reads/SRP011999/SRS489865/SRX363137/SRR1008285/SRR1008285.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYGB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-04A-01D	DNA	EFO	SRS300877	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H08	SRX184426	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-04A-01D GS01055-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L03.bam	SRR559364	@dbgap@:reads/SRP011999/SRS300877/SRX184426/SRR559364/SRR559364.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYGB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-09A-01D	DNA	EFO	SRS300878	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G08	SRX184427	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-09A-01D GS01055-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50677-FS3_L01.bam	SRR559357	@dbgap@:reads/SRP011999/SRS300878/SRX184427/SRR559357/SRR559357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYGB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYGB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsPrimary.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYGB_NormalVsRecurrent.png	4			
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYGB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYGB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYGB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYGB-14A-01D	DNA	EFO	SRS300879	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E10	SRX184425	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYGB-14A-01D GS01055-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50636-FS3_L01.bam	SRR559371	@dbgap@:reads/SRP011999/SRS300879/SRX184425/SRR559371/SRR559371.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYYV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-03A-01D	DNA	EFO	SRS300880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_C10	SRX176554	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-03A-01D GS01055-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50576-FS3_L01.bam	SRR538877	@dbgap@:reads/SRP011999/SRS300880/SRX176554/SRR538877/SRR538877.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYYV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-04A-01D	DNA	EFO	SRS300881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F08	SRX176555	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-04A-01D GS01055-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50577-FS3_L01.bam	SRR538870	@dbgap@:reads/SRP011999/SRS300881/SRX176555/SRR538870/SRR538870.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYYV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYYV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsPrimary.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYYV_NormalVsRecurrent.png	4			
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYYV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYYV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYYV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYYV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYYV-10A-01D	DNA	EFO	SRS300882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D10	SRX176553	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYYV-10A-01D GS01055-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50638-FS3_L01.bam	SRR538884	@dbgap@:reads/SRP011999/SRS300882/SRX176553/SRR538884/SRR538884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYZE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-09A-01D	DNA	EFO	SRS300883	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B08	SRX176143	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-09A-01D GS01042-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48609-FS3_L01.bam	SRR537153	@dbgap@:reads/SRP011999/SRS300883/SRX176143/SRR537153/SRR537153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANYZE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANYZE_NormalVsPrimary.png	4			
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANYZE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANYZE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANYZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANYZE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANYZE-14A-01D	DNA	EFO	SRS300884	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C08	SRX176142	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANYZE-14A-01D GS01042-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48610-FS3_L01.bam	SRR537160	@dbgap@:reads/SRP011999/SRS300884/SRX176142/SRR537160/SRR537160.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-04A-01D	DNA	EFO	SRS300885	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A04	SRX472458	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-04A-01D GS01043-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46503-FS3-L01.bam	SRR1171349	@dbgap@:reads/SRP011999/SRS300885/SRX472458/SRR1171349/SRR1171349.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-09A-01D	DNA	EFO	SRS300886	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F03	SRX472457	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-09A-01D GS01043-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L06.bam	SRR1171357	@dbgap@:reads/SRP011999/SRS300886/SRX472457/SRR1171357/SRR1171357.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsPrimary.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsRecurrent.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-14A-01D	DNA	EFO	SRS300887	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H03	SRX472456	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-14A-01D GS01043-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3-L08.bam	SRR1171365	@dbgap@:reads/SRP011999/SRS300887/SRX472456/SRR1171365/SRR1171365.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft1C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.1C-01D	DNA	EFO	SRS509396	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G09	SRX385253	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.1C-01D GS02039-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67299-FS3_L01.bam	SRR1040505	@dbgap@:reads/SRP011999/SRS509396/SRX385253/SRR1040505/SRR1040505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZPJ_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZPJ_NormalVsXenograft2C.png	4			
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZPJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZPJ-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZPJ-60.2C-01D	DNA	EFO	SRS509360	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H09	SRX385204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZPJ-60.2C-01D GS02039-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67303-FS3_L01.bam	SRR1040454	@dbgap@:reads/SRP011999/SRS509360/SRX385204/SRR1040454/SRR1040454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZPJ_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZPJ_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-04A-01D	DNA	EFO	SRS300888	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F04	SRX176000	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-04A-01D GS01042-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48605-FS3_L01.bam	SRR536985	@dbgap@:reads/SRP011999/SRS300888/SRX176000/SRR536985/SRR536985.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-09A-01D	DNA	EFO	SRS300889	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D04	SRX176001	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-09A-01D GS01042-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48606-FS3_L01.bam	SRR536977	@dbgap@:reads/SRP011999/SRS300889/SRX176001/SRR536977/SRR536977.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsPrimary.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXC_NormalVsRecurrent.png	4			
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXC-10A-01D	DNA	EFO	SRS300890	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E04	SRX175999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXC-10A-01D GS01042-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48637-FS3_L01.bam	SRR536992	@dbgap@:reads/SRP011999/SRS300890/SRX175999/SRR536992/SRR536992.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-09A-01D	DNA	EFO	SRS489856	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H05	SRX363128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-09A-01D GS01996-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64736-FS3_L01.bam	SRR1008211	@dbgap@:reads/SRP011999/SRS489856/SRX363128/SRR1008211/SRR1008211.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PANZXZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PANZXZ_NormalVsPrimary.png	4			
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PANZXZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PANZXZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PANZXZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PANZXZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PANZXZ-14A-01D	DNA	EFO	SRS489855	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A08	SRX363127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PANZXZ-14A-01D GS01996-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L01.bam	SRR1008218	@dbgap@:reads/SRP011999/SRS489855/SRX363127/SRR1008218/SRR1008218.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPACP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-03A-01D	DNA	EFO	SRS300891	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H05	SRX170608	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-03A-01D GS01042-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48953-FS3_L01.bam	SRR526836	@dbgap@:reads/SRP011999/SRS300891/SRX170608/SRR526836/SRR526836.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPACP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-04A-01D	DNA	EFO	SRS300892	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B06	SRX170607	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-04A-01D GS01042-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48779-FS3_L01.bam	SRR526844	@dbgap@:reads/SRP011999/SRS300892/SRX170607/SRR526844/SRR526844.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPACP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPACP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsPrimary.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPACP_NormalVsRecurrent.png	4			
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPACP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPACP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPACP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPACP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPACP-14A-01D	DNA	EFO	SRS300893	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A06	SRX170606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPACP-14A-01D GS01042-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48185-FS3_L01.bam	SRR526851	@dbgap@:reads/SRP011999/SRS300893/SRX170606/SRR526851/SRR526851.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAGK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-04A-01D	DNA	EFO	SRS160207	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G09	SRX130461	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-04A-01D GS00869-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39255-FS3_L01.bam	SRR446645	@dbgap@:reads/SRP011999/SRS160207/SRX130461/SRR446645/SRR446645.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-09A-01D	DNA	EFO	SRS270511	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B09	SRX130462	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-09A-01D GS00869-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39256-FS3_L01.bam	SRR446638	@dbgap@:reads/SRP011999/SRS270511/SRX130462/SRR446638/SRR446638.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAGK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAGK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsPrimary.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAGK_NormalVsRecurrent.png	4			
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAGK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAGK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPAGK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAGK-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAGK-14A-01D	DNA	EFO	SRS270512	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E01	SRX130460	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAGK-14A-01D GS00869-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39257-FS3_L01.bam	SRR446652	@dbgap@:reads/SRP011999/SRS270512/SRX130460/SRR446652/SRR446652.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAIZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-09A-01D	DNA	EFO	SRS300894	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D08	SRX176029	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-09A-01D GS01043-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48820-FS3_L01.bam	SRR537026	@dbgap@:reads/SRP011999/SRS300894/SRX176029/SRR537026/SRR537026.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPAIZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPAIZ_NormalVsPrimary.png	4			
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPAIZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPAIZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPAIZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAIZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAIZ-10A-01D	DNA	EFO	SRS300895	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E08	SRX176028	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPAIZ-10A-01D GS01043-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48822-FS3_L01.bam	SRR537033	@dbgap@:reads/SRP011999/SRS300895/SRX176028/SRR537033/SRR537033.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPAXK-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPAXK.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPAXK-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPAXK.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPAXK-09A-01D.indel.vcf	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPAXK-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPAXK-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-09A-01D	DNA	EFO	SRS1761338	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-09A-01D A59112 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59112	SRX2241926	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPAXK-09A-01D A59112 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59112_3_lanes_dupsFlagged.bam	SRR4419470	@dbgap@:reads/SRP011999/SRS1761338/SRX2241926/SRR4419470/SRR4419470.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPAXK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPAXK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPAXK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPAXK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPAXK-10A-01D	DNA	EFO	SRS1761293	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPAXK-10A-01D A59222 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59222	SRX2241879	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPAXK-10A-01D A59222 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59222_2_lanes_dupsFlagged.bam	SRR4419507	@dbgap@:reads/SRP011999/SRS1761293/SRX2241879/SRR4419507/SRR4419507.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPAXK-09A-01D_TARGET-10-PAPAXK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPAXK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBES_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-03A-01D	DNA	EFO	SRS489882	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_H03	SRX363154	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-03A-01D GS01968-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62491-FS3_L01.bam	SRR1008391	@dbgap@:reads/SRP011999/SRS489882/SRX363154/SRR1008391/SRR1008391.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBES_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBES_NormalVsPrimary.png	4			
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBES_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBES_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBES	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBES-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBES-14A-01D	DNA	EFO	SRS489880	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01968-CLS_A04	SRX363153	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBES-14A-01D GS01968-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62492-FS3_L01.bam	SRR1008398	@dbgap@:reads/SRP011999/SRS489880/SRX363153/SRR1008398/SRR1008398.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBFN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-09A-01D	DNA	EFO	SRS489792	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E10	SRX363056	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-09A-01D GS01996-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65062-FS3_L01.bam	SRR1007713	@dbgap@:reads/SRP011999/SRS489792/SRX363056/SRR1007713/SRR1007713.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBFN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBFN_NormalVsPrimary.png	4			
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBFN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBFN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBFN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBFN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBFN-14A-01D	DNA	EFO	SRS489791	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_F10	SRX363055	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBFN-14A-01D GS01996-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L01.bam	SRR1007720	@dbgap@:reads/SRP011999/SRS489791/SRX363055/SRR1007720/SRR1007720.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBSE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-09A-01D	DNA	EFO	SRS489823	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B08	SRX363087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-09A-01D GS01996-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64920-FS3_L03.bam	SRR1007930	@dbgap@:reads/SRP011999/SRS489823/SRX363087/SRR1007930/SRR1007930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBSE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSE_NormalVsPrimary.png	4			
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBSE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSE-14A-01D	DNA	EFO	SRS489822	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C08	SRX363086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSE-14A-01D GS01996-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64741-FS3_L01.bam	SRR1007937	@dbgap@:reads/SRP011999/SRS489822/SRX363086/SRR1007937/SRR1007937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBSY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-09A-01D	DNA	EFO	SRS300896	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C06	SRX159771	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-09A-01D GS01043-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48221-FS3_L01.bam	SRR521291	@dbgap@:reads/SRP011999/SRS300896/SRX159771/SRR521291/SRR521291.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBSY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBSY_NormalVsPrimary.png	4			
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBSY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBSY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBSY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBSY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBSY-10A-01D	DNA	EFO	SRS300897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D06	SRX159770	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBSY-10A-01D GS01043-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48966-FS3_L01.bam	SRR521298	@dbgap@:reads/SRP011999/SRS300897/SRX159770/SRR521298/SRR521298.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-03A-01D	DNA	EFO	SRS489783	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D02	SRX363046	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-03A-01D GS01996-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64614-FS3_L01.bam	SRR1007647	@dbgap@:reads/SRP011999/SRS489783/SRX363046/SRR1007647/SRR1007647.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPBZK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPBZK_NormalVsPrimary.png	4			
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPBZK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPBZK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPBZK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPBZK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPBZK-10A-01D	DNA	EFO	SRS489781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_B12	SRX363045	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPBZK-10A-01D GS01996-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64615-FS3_L01.bam	SRR1007654	@dbgap@:reads/SRP011999/SRS489781/SRX363045/SRR1007654/SRR1007654.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00943-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-04A-01D	DNA	EFO	SRS270514	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C02	SRX148759	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-04A-01D GS00726-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41741-FS3_L01.bam	SRR499596	@dbgap@:reads/SRP011999/SRS270514/SRX148759/SRR499596/SRR499596.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00726-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-09A-01D	DNA	EFO	SRS287447	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C02	SRX148760	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-09A-01D GS00943-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41742-FS3_L01.bam	SRR499588	@dbgap@:reads/SRP011999/SRS287447/SRX148760/SRR499588/SRR499588.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCUR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsPrimary.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCUR_NormalVsRecurrent.png	4			
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCUR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCUR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCUR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCUR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCUR-10A-01D	DNA	EFO	SRS270515	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B02	SRX148758	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCUR-10A-01D GS00726-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33090-FS3_L01.bam	SRR499604	@dbgap@:reads/SRP011999/SRS270515/SRX148758/SRR499604/SRR499604.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCVZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-04A-01D	DNA	EFO	SRS300898	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B10	SRX176557	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-04A-01D GS01055-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50579-FS3_L01.bam	SRR538898	@dbgap@:reads/SRP011999/SRS300898/SRX176557/SRR538898/SRR538898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCVZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-09A-01D	DNA	EFO	SRS300899	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D08	SRX176558	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-09A-01D GS01055-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L03.bam	SRR538891	@dbgap@:reads/SRP011999/SRS300899/SRX176558/SRR538891/SRR538891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCVZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCVZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsPrimary.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCVZ_NormalVsRecurrent.png	4			
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCVZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCVZ-10A-01D	DNA	EFO	SRS300900	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E08	SRX176556	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCVZ-10A-01D GS01055-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50578-FS3_L01.bam	SRR538905	@dbgap@:reads/SRP011999/SRS300900/SRX176556/SRR538905/SRR538905.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-09A-01D	DNA	EFO	SRS502545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_F10	SRX377738	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-09A-01D GS02031-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67490-FS3_L01.bam	SRR1029958	@dbgap@:reads/SRP011999/SRS502545/SRX377738/SRR1029958/SRR1029958.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsPrimary.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-10A-01D	DNA	EFO	SRS501332	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_G10	SRX375650	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-10A-01D GS02031-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L01.bam	SRR1028193	@dbgap@:reads/SRP011999/SRS501332/SRX375650/SRR1028193/SRR1028193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft1C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.1C-01D	DNA	EFO	SRS508897	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A10	SRX384698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.1C-01D GS02039-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L01.bam	SRR1039888	@dbgap@:reads/SRP011999/SRS508897/SRX384698/SRR1039888/SRR1039888.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft2C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.2C-01D	DNA	EFO	SRS510034	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_B10	SRX386025	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.2C-01D GS02039-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69321-FS3_L01.bam	SRR1041679	@dbgap@:reads/SRP011999/SRS510034/SRX386025/SRR1041679/SRR1041679.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPCXR_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPCXR_NormalVsXenograft3C.png	4			
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPCXR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPCXR-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPCXR-60.3C-01D	DNA	EFO	SRS510385	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C10	SRX386371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPCXR-60.3C-01D GS02039-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69269-FS3_L03.bam	SRR1042045	@dbgap@:reads/SRP011999/SRS510385/SRX386371/SRR1042045/SRR1042045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPCXR_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPCXR_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDFU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-09A-01D	DNA	EFO	SRS502539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_H10	SRX377732	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-09A-01D GS02031-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67491-FS3_L03.bam	SRR1029939	@dbgap@:reads/SRP011999/SRS502539/SRX377732/SRR1029939/SRR1029939.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDFU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDFU_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsPrimary.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-10A-01D	DNA	EFO	SRS502950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_A11	SRX378155	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-10A-01D GS02031-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS68208-FS3_L01.bam	SRR1030558	@dbgap@:reads/SRP011999/SRS502950/SRX378155/SRR1030558/SRR1030558.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDFU_NormalVsXenograft1A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDFU_NormalVsXenograft1A.png	4			
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDFU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDFU-60.1A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDFU-60.1A-01D	DNA	EFO	SRS511137	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H10	SRX387233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDFU-60.1A-01D GS02039-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70334-FS3_L01.bam	SRR1043108	@dbgap@:reads/SRP011999/SRS511137/SRX387233/SRR1043108/SRR1043108.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDFU_NormalVsXenograft1A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDFU_NormalVsXenograft1A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDJM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-04A-01D	DNA	EFO	SRS270517	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F02	SRX120884	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-04A-01D GS00726-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33089-FS3_L01.bam	SRR410262	@dbgap@:reads/SRP011999/SRS270517/SRX120884/SRR410262/SRR410262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDJM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-09A-01D	DNA	EFO	SRS287448	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D02	SRX120885	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-09A-01D GS00726-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32909-FS3_L01.bam	SRR410254	@dbgap@:reads/SRP011999/SRS287448/SRX120885/SRR410254/SRR410254.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDJM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDJM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsPrimary.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDJM_NormalVsRecurrent.png	4			
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDJM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDJM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDJM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDJM-10A-01D	DNA	EFO	SRS270518	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E02	SRX120883	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDJM-10A-01D GS00726-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32988-FS3_L01.bam	SRR410270	@dbgap@:reads/SRP011999/SRS270518/SRX120883/SRR410270/SRR410270.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDKJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-04A-01D	DNA	EFO	SRS270520	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D02	SRX171007	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-04A-01D GS01042-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49062-FS3_L01.bam	SRR527469	@dbgap@:reads/SRP011999/SRS270520/SRX171007/SRR527469/SRR527469.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDKJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-09A-01D	DNA	EFO	SRS287449	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H11	SRX171008	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-09A-01D GS01042-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49063-FS3_L01.bam	SRR527462	@dbgap@:reads/SRP011999/SRS287449/SRX171008/SRR527462/SRR527462.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDKJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDKJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsPrimary.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDKJ_NormalVsRecurrent.png	4			
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDKJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDKJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDKJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDKJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDKJ-10A-01D	DNA	EFO	SRS270521	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C02	SRX171006	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDKJ-10A-01D GS01042-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49061-FS3_L01.bam	SRR527477	@dbgap@:reads/SRP011999/SRS270521/SRX171006/SRR527477/SRR527477.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDNB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-03A-01D	DNA	EFO	SRS489806	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H10	SRX363070	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-03A-01D GS01997-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L01.bam	SRR1007810	@dbgap@:reads/SRP011999/SRS489806/SRX363070/SRR1007810/SRR1007810.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDNB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDNB_NormalVsPrimary.png	4			
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDNB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDNB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDNB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDNB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDNB-10A-01D	DNA	EFO	SRS489805	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A11	SRX363069	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDNB-10A-01D GS01997-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64812-FS3_L01.bam	SRR1007817	@dbgap@:reads/SRP011999/SRS489805/SRX363069/SRR1007817/SRR1007817.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-09A-01D	DNA	EFO	SRS300901	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H07	SRX160091	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-09A-01D GS01042-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48611-FS3_L01.bam	SRR521807	@dbgap@:reads/SRP011999/SRS300901/SRX160091/SRR521807/SRR521807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUF_NormalVsPrimary.png	4			
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDUF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUF-10A-01D	DNA	EFO	SRS300902	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A08	SRX160090	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUF-10A-01D GS01042-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48783-FS3_L01.bam	SRR521814	@dbgap@:reads/SRP011999/SRS300902/SRX160090/SRR521814/SRR521814.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-04A-01D	DNA	EFO	SRS300903	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F09	SRX184830	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-04A-01D GS01055-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50666-FS3_L01.bam	SRR561447	@dbgap@:reads/SRP011999/SRS300903/SRX184830/SRR561447/SRR561447.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-09A-01D	DNA	EFO	SRS300904	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D09	SRX184829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-09A-01D GS01055-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50667-FS3_L01.bam	SRR561454	@dbgap@:reads/SRP011999/SRS300904/SRX184829/SRR561454/SRR561454.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDUV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsPrimary.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDUV_NormalVsRecurrent.png	4			
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDUV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDUV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDUV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDUV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDUV-10A-01D	DNA	EFO	SRS300905	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E09	SRX184828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDUV-10A-01D GS01055-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50668-FS3_L01.bam	SRR561461	@dbgap@:reads/SRP011999/SRS300905/SRX184828/SRR561461/SRR561461.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDWT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-04A-01D	DNA	EFO	SRS270523	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E02	SRX151829	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-04A-01D GS00943-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41711-FS3_L01.bam	SRR504566	@dbgap@:reads/SRP011999/SRS270523/SRX151829/SRR504566/SRR504566.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDWT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-09A-01D	DNA	EFO	SRS287450	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G02	SRX151828	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-09A-01D GS00726-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32986-FS3_L01.bam	SRR504573	@dbgap@:reads/SRP011999/SRS287450/SRX151828/SRR504573/SRR504573.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDWT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPDWT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsPrimary.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPDWT_NormalVsRecurrent.png	4			
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPDWT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPDWT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPDWT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPDWT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPDWT-10A-01D	DNA	EFO	SRS270524	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H02	SRX151827	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPDWT-10A-01D GS00726-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32985-FS3_L01.bam	SRR504581	@dbgap@:reads/SRP011999/SRS270524/SRX151827/SRR504581/SRR504581.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-03A-01D	DNA	EFO	SRS300906	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F06	SRX176222	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-03A-01D GS01042-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48878-FS3_L01.bam	SRR538276	@dbgap@:reads/SRP011999/SRS300906/SRX176222/SRR538276/SRR538276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEAB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-04A-01D	DNA	EFO	SRS300907	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H06	SRX176223	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-04A-01D GS01042-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48877-FS3_L01.bam	SRR538269	@dbgap@:reads/SRP011999/SRS300907/SRX176223/SRR538269/SRR538269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEAB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEAB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsPrimary.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEAB_NormalVsRecurrent.png	4			
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEAB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEAB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPEAB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEAB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEAB-10A-01D	DNA	EFO	SRS300908	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G06	SRX176221	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEAB-10A-01D GS01042-CLS_G06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48879-FS3_L01.bam	SRR538283	@dbgap@:reads/SRP011999/SRS300908/SRX176221/SRR538283/SRR538283.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPECF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-04A-01D	DNA	EFO	SRS300909	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H09	SRX182858	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-04A-01D GS01055-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L01.bam	SRR553769	@dbgap@:reads/SRP011999/SRS300909/SRX182858/SRR553769/SRR553769.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPECF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-09A-01D	DNA	EFO	SRS300910	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_D07	SRX182859	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-09A-01D GS01055-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50620-FS3_L01.bam	SRR553762	@dbgap@:reads/SRP011999/SRS300910/SRX182859/SRR553762/SRR553762.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPECF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPECF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsPrimary.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPECF_NormalVsRecurrent.png	4			
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPECF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPECF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPECF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPECF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPECF-10A-01D	DNA	EFO	SRS300911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_E07	SRX182857	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPECF-10A-01D GS01055-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50621-FS3_L01.bam	SRR553776	@dbgap@:reads/SRP011999/SRS300911/SRX182857/SRR553776/SRR553776.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEJN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-09A-01D	DNA	EFO	SRS300912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F08	SRX176364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-09A-01D GS01043-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46947-FS3_L01.bam	SRR538405	@dbgap@:reads/SRP011999/SRS300912/SRX176364/SRR538405/SRR538405.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEJN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEJN_NormalVsPrimary.png	4			
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEJN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEJN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEJN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEJN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEJN-10A-01D	DNA	EFO	SRS300913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G08	SRX176363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEJN-10A-01D GS01043-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46867-FS3_L01.bam	SRR538411	@dbgap@:reads/SRP011999/SRS300913/SRX176363/SRR538411/SRR538411.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPESW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-09B-01D	DNA	EFO	SRS382170	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_H07	SRX213233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-09B-01D GS01116-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56957-FS3_L01.bam	SRR641513	@dbgap@:reads/SRP011999/SRS382170/SRX213233/SRR641513/SRR641513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPESW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPESW_NormalVsPrimary.png	4			
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPESW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPESW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPESW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPESW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPESW-10A-01D	DNA	EFO	SRS300915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01116-CLS_C06	SRX213232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPESW-10A-01D GS01116-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS56927-FS3_L01.bam	SRR641520	@dbgap@:reads/SRP011999/SRS300915/SRX213232/SRR641520/SRR641520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEWB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-09A-01D	DNA	EFO	SRS489793	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_E02	SRX363058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-09A-01D GS01996-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64866-FS3_L01.bam	SRR1007727	@dbgap@:reads/SRP011999/SRS489793/SRX363058/SRR1007727/SRR1007727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPEWB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPEWB_NormalVsPrimary.png	4			
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPEWB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPEWB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPEWB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPEWB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPEWB-10A-01D	DNA	EFO	SRS489794	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C12	SRX363057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPEWB-10A-01D GS01996-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63533-FS3_L01.bam	SRR1007735	@dbgap@:reads/SRP011999/SRS489794/SRX363057/SRR1007735/SRR1007735.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPFWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-09A-01D	DNA	EFO	SRS300916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H08	SRX176586	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-09A-01D GS01043-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46870-FS3_L03.bam	SRR539099	@dbgap@:reads/SRP011999/SRS300916/SRX176586/SRR539099/SRR539099.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPFWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPFWH_NormalVsPrimary.png	4			
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPFWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPFWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPFWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPFWH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPFWH-10A-01D	DNA	EFO	SRS300917	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A09	SRX176585	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPFWH-10A-01D GS01043-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48266-FS3_L01.bam	SRR539106	@dbgap@:reads/SRP011999/SRS300917/SRX176585/SRR539106/SRR539106.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGFP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-09A-01D	DNA	EFO	SRS300918	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B09	SRX176577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-09A-01D GS01043-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46868-FS3_L01.bam	SRR539034	@dbgap@:reads/SRP011999/SRS300918/SRX176577/SRR539034/SRR539034.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGFP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGFP_NormalVsPrimary.png	4			
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGFP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGFP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGFP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGFP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGFP-10A-01D	DNA	EFO	SRS300919	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C09	SRX176576	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGFP-10A-01D GS01043-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46869-FS3_L01.bam	SRR539041	@dbgap@:reads/SRP011999/SRS300919/SRX176576/SRR539041/SRR539041.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGMV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-09A-01D	DNA	EFO	SRS489912	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D09	SRX363184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-09A-01D GS01997-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63070-FS3_L01.bam	SRR1008598	@dbgap@:reads/SRP011999/SRS489912/SRX363184/SRR1008598/SRR1008598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGMV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGMV_NormalVsPrimary.png	4			
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGMV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGMV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGMV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGMV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGMV-14A-01D	DNA	EFO	SRS489911	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E09	SRX363183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGMV-14A-01D GS01997-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63264-FS3_L01.bam	SRR1008605	@dbgap@:reads/SRP011999/SRS489911/SRX363183/SRR1008605/SRR1008605.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-03A-01D	DNA	EFO	SRS489780	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G11	SRX363044	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-03A-01D GS01996-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64611-FS3_L01.bam	SRR1007633	@dbgap@:reads/SRP011999/SRS489780/SRX363044/SRR1007633/SRR1007633.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGNC_NormalVsPrimary.png	4			
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGNC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGNC-10A-01D	DNA	EFO	SRS489779	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_H11	SRX363043	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGNC-10A-01D GS01996-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64612-FS3_L01.bam	SRR1007640	@dbgap@:reads/SRP011999/SRS489779/SRX363043/SRR1007640/SRR1007640.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGYC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-04A-01D	DNA	EFO	SRS300920	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G05	SRX160087	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-04A-01D GS01042-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48954-FS3_L01.bam	SRR521772	@dbgap@:reads/SRP011999/SRS300920/SRX160087/SRR521772/SRR521772.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGYC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-09A-01D	DNA	EFO	SRS300921	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E05	SRX160086	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-09A-01D GS01042-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48955-FS3_L01.bam	SRR521779	@dbgap@:reads/SRP011999/SRS300921/SRX160086/SRR521779/SRR521779.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGYC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPGYC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsPrimary.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPGYC_NormalVsRecurrent.png	4			
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPGYC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPGYC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPGYC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPGYC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPGYC-14A-01D	DNA	EFO	SRS300922	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F05	SRX160085	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPGYC-14A-01D GS01042-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48678-FS3_L01.bam	SRR521786	@dbgap@:reads/SRP011999/SRS300922/SRX160085/SRR521786/SRR521786.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHCJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-09A-01D	DNA	EFO	SRS300923	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D09	SRX160107	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-09A-01D GS01043-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48900-FS3_L01.bam	SRR521916	@dbgap@:reads/SRP011999/SRS300923/SRX160107/SRR521916/SRR521916.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHCJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHCJ_NormalVsPrimary.png	4			
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHCJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHCJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHCJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHCJ-14A-01D	DNA	EFO	SRS300924	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E09	SRX160106	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHCJ-14A-01D GS01043-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48899-FS3_L01.bam	SRR521923	@dbgap@:reads/SRP011999/SRS300924/SRX160106/SRR521923/SRR521923.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHEK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3_L03.bam	SRR633486	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR633486/SRR633486.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHEK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-03B	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-03B-01D	DNA	EFO	SRS379881	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01113-CLS_G08	SRX210606	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-03B-01D GS01113-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS55759-FS3-L01.bam	SRR1055118	@dbgap@:reads/SRP011999/SRS379881/SRX210606/SRR1055118/SRR1055118.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHEK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-04A-01D	DNA	EFO	SRS300926	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_D09	SRX396119	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-04A-01D GS01044-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49158-FS3-L03.bam	SRR1055111	@dbgap@:reads/SRP011999/SRS300926/SRX396119/SRR1055111/SRR1055111.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHEK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHEK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsPrimary.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHEK_NormalVsRecurrent.png	4			
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHEK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHEK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHEK-10A-01D	DNA	EFO	SRS300927	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_C09	SRX396118	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHEK-10A-01D GS01044-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49159-FS3-L01.bam	SRR1055125	@dbgap@:reads/SRP011999/SRS300927/SRX396118/SRR1055125/SRR1055125.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHGD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-09A-01D	DNA	EFO	SRS489784	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_C02	SRX363048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-09A-01D GS01996-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L03.bam	SRR1007661	@dbgap@:reads/SRP011999/SRS489784/SRX363048/SRR1007661/SRR1007661.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHGD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHGD_NormalVsPrimary.png	4			
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHGD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHGD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHGD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHGD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHGD-10A-01D	DNA	EFO	SRS489782	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_A12	SRX363047	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHGD-10A-01D GS01996-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64613-FS3_L01.bam	SRR1007668	@dbgap@:reads/SRP011999/SRS489782/SRX363047/SRR1007668/SRR1007668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHJF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-09A-01D	DNA	EFO	SRS300928	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E04	SRX170603	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-09A-01D GS01043-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48778-FS3_L01.bam	SRR526614	@dbgap@:reads/SRP011999/SRS300928/SRX170603/SRR526614/SRR526614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHJF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHJF_NormalVsPrimary.png	4			
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHJF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHJF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHJF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHJF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHJF-10A-01D	DNA	EFO	SRS300929	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F04	SRX170602	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHJF-10A-01D GS01043-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48960-FS3_L01.bam	SRR526622	@dbgap@:reads/SRP011999/SRS300929/SRX170602/SRR526622/SRR526622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHMH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-09A-01D	DNA	EFO	SRS300930	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D10	SRX171643	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-09A-01D GS01042-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48807-FS3_L01.bam	SRR529497	@dbgap@:reads/SRP011999/SRS300930/SRX171643/SRR529497/SRR529497.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHMH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHMH_NormalVsPrimary.png	4			
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHMH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHMH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHMH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHMH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHMH-14A-01D	DNA	EFO	SRS300931	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E10	SRX171642	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHMH-14A-01D GS01042-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L03.bam	SRR529504	@dbgap@:reads/SRP011999/SRS300931/SRX171642/SRR529504/SRR529504.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPHPX-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPHPX.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPHPX-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPHPX.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPHPX-03A-01D.indel.vcf	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPHPX-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPHPX-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-03A-01D	DNA	EFO	SRS1761323	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-03A-01D A59120 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59120	SRX2241909	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPHPX-03A-01D A59120 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59120_3_lanes_dupsFlagged.bam	SRR4419529	@dbgap@:reads/SRP011999/SRS1761323/SRX2241909/SRR4419529/SRR4419529.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPHPX-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPHPX-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHPX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHPX-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHPX-14A-01D	DNA	EFO	SRS1761284	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHPX-14A-01D A59230 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59230	SRX2241870	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPHPX-14A-01D A59230 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59230_2_lanes_dupsFlagged.bam	SRR4419464	@dbgap@:reads/SRP011999/SRS1761284/SRX2241870/SRR4419464/SRR4419464.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPHPX-03A-01D_TARGET-10-PAPHPX-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHPX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHRT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-09A-01D	DNA	EFO	SRS489804	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F09	SRX363068	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-09A-01D GS01997-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64806-FS3_L01.bam	SRR1007796	@dbgap@:reads/SRP011999/SRS489804/SRX363068/SRR1007796/SRR1007796.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHRT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHRT_NormalVsPrimary.png	4			
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHRT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHRT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHRT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHRT-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHRT-14A-01D	DNA	EFO	SRS489803	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G09	SRX363067	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHRT-14A-01D GS01997-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64805-FS3_L01.bam	SRR1007803	@dbgap@:reads/SRP011999/SRS489803/SRX363067/SRR1007803/SRR1007803.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-09A-01D	DNA	EFO	SRS489802	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H09	SRX363066	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-09A-01D GS01997-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65070-FS3_L01.bam	SRR1007784	@dbgap@:reads/SRP011999/SRS489802/SRX363066/SRR1007784/SRR1007784.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPHWH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPHWH_NormalVsPrimary.png	4			
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPHWH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPHWH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPHWH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHWH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHWH-14A-01D	DNA	EFO	SRS489801	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A10	SRX363065	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPHWH-14A-01D GS01997-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L01.bam	SRR1007790	@dbgap@:reads/SRP011999/SRS489801/SRX363065/SRR1007790/SRR1007790.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPHYN-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPHYN.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPHYN-09A-01D.indel.vcf	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPHYN-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPHYN-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-09A-01D	DNA	EFO	SRS1868072	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-09A-01D A59093 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59093	SRX2430619	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPHYN-09A-01D A59093 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59093_3_lanes_dupsFlagged.bam	SRR5115247	@dbgap@:reads/SRP011999/SRS1868072/SRX2430619/SRR5115247/SRR5115247.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPHYN-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPHYN-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPHYN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPHYN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPHYN-10A-01D	DNA	EFO	SRS1868069	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPHYN-10A-01D A59203 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59203	SRX2430616	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPHYN-10A-01D A59203 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59203_2_lanes_dupsFlagged.bam	SRR5115250	@dbgap@:reads/SRP011999/SRS1868069/SRX2430616/SRR5115250/SRR5115250.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPHYN-09A-01D_TARGET-10-PAPHYN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPHYN.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-04A-01D	DNA	EFO	SRS270527	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H03	SRX148188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-04A-01D GS00726-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32980-FS3_L01.bam	SRR497092	@dbgap@:reads/SRP011999/SRS270527/SRX148188/SRR497092/SRR497092.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F03	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00726-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-09A-01D	DNA	EFO	SRS287452	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G02	SRX148187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-09A-01D GS00943-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41532-FS3_L01.bam	SRR497100	@dbgap@:reads/SRP011999/SRS287452/SRX148187/SRR497100/SRR497100.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G03	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00726-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIDY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsPrimary.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIDY_NormalVsRecurrent.png	4			
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIDY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIDY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIDY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIDY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIDY-10A-01D	DNA	EFO	SRS270528	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H02	SRX148186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIDY-10A-01D GS00943-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32905-FS3_L01.bam	SRR497107	@dbgap@:reads/SRP011999/SRS270528/SRX148186/SRR497107/SRR497107.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-03A-01D	DNA	EFO	SRS489825	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_H11	SRX363089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-03A-01D GS02006-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66768-FS3_L01.bam	SRR1007944	@dbgap@:reads/SRP011999/SRS489825/SRX363089/SRR1007944/SRR1007944.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIGX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIGX_NormalVsPrimary.png	4			
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIGX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIGX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIGX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIGX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIGX-10A-01D	DNA	EFO	SRS489824	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02006-CLS_G12	SRX363088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIGX-10A-01D GS02006-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS66769-FS3_L01.bam	SRR1007951	@dbgap@:reads/SRP011999/SRS489824/SRX363088/SRR1007951/SRR1007951.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A07	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00726-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-04A-01D	DNA	EFO	SRS270530	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B04	SRX149210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-04A-01D GS00943-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41412-FS3_L01.bam	SRR500168	@dbgap@:reads/SRP011999/SRS270530/SRX149210/SRR500168/SRR500168.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-09A-01D	DNA	EFO	SRS287453	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F06	SRX149209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-09A-01D GS00726-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30746-FS3_L01.bam	SRR500175	@dbgap@:reads/SRP011999/SRS287453/SRX149209/SRR500175/SRR500175.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsPrimary.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJB_NormalVsRecurrent.png	4			
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIJB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJB-10A-01D	DNA	EFO	SRS270531	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H06	SRX149208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJB-10A-01D GS00726-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30745-FS3_L01.bam	SRR500183	@dbgap@:reads/SRP011999/SRS270531/SRX149208/SRR500183/SRR500183.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-09A-01D	DNA	EFO	SRS489790	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_G10	SRX363054	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-09A-01D GS01996-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64735-FS3_L08.bam	SRR1007701	@dbgap@:reads/SRP011999/SRS489790/SRX363054/SRR1007701/SRR1007701.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIJM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIJM_NormalVsPrimary.png	4			
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIJM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIJM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIJM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIJM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIJM-14A-01D	DNA	EFO	SRS489789	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01996-CLS_D06	SRX363053	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIJM-14A-01D GS01996-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65028-FS3_L01.bam	SRR1007706	@dbgap@:reads/SRP011999/SRS489789/SRX363053/SRR1007706/SRR1007706.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIKG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-09A-01D	DNA	EFO	SRS489800	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B10	SRX363064	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-09A-01D GS01997-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS65444-FS3_L01.bam	SRR1007770	@dbgap@:reads/SRP011999/SRS489800/SRX363064/SRR1007770/SRR1007770.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIKG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIKG_NormalVsPrimary.png	4			
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIKG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIKG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIKG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIKG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIKG-14A-01D	DNA	EFO	SRS489799	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C10	SRX363063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIKG-14A-01D GS01997-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64874-FS3_L03.bam	SRR1007777	@dbgap@:reads/SRP011999/SRS489799/SRX363063/SRR1007777/SRR1007777.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIRZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-09A-01D	DNA	EFO	SRS300932	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F09	SRX160109	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-09A-01D GS01043-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48902-FS3_L01.bam	SRR521930	@dbgap@:reads/SRP011999/SRS300932/SRX160109/SRR521930/SRR521930.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPIRZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPIRZ_NormalVsPrimary.png	4			
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPIRZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPIRZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPIRZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIRZ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIRZ-14A-01D	DNA	EFO	SRS300933	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G09	SRX160108	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPIRZ-14A-01D GS01043-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48901-FS3_L01.bam	SRR521937	@dbgap@:reads/SRP011999/SRS300933/SRX160108/SRR521937/SRR521937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPISG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-03A-01D	DNA	EFO	SRS270532	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D04	SRX121049	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-03A-01D GS00726-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32978-FS3_L01.bam	SRR411173	@dbgap@:reads/SRP011999/SRS270532/SRX121049/SRR411173/SRR411173.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPISG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-04A-01D	DNA	EFO	SRS270533	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F04	SRX121050	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-04A-01D GS00726-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32977-FS3_L01.bam	SRR411165	@dbgap@:reads/SRP011999/SRS270533/SRX121050/SRR411165/SRR411165.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPISG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPISG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsPrimary.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPISG_NormalVsRecurrent.png	4			
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPISG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPISG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPISG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPISG-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPISG-14A-01D	DNA	EFO	SRS270534	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E04	SRX121048	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPISG-14A-01D GS00726-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32817-FS3_L01.bam	SRR411181	@dbgap@:reads/SRP011999/SRS270534/SRX121048/SRR411181/SRR411181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPIYG-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPIYG.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPIYG-03A-01D.indel.vcf	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPIYG-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPIYG-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-03A-01D	DNA	EFO	SRS1761267	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-03A-01D A59121 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59121	SRX2241853	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPIYG-03A-01D A59121 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59121_3_lanes_dupsFlagged.bam	SRR4419475	@dbgap@:reads/SRP011999/SRS1761267/SRX2241853/SRR4419475/SRR4419475.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPIYG-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPIYG-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPIYG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPIYG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPIYG-14A-01D	DNA	EFO	SRS1761281	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPIYG-14A-01D A59231 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59231	SRX2241867	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPIYG-14A-01D A59231 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59231_2_lanes_dupsFlagged.bam	SRR4419513	@dbgap@:reads/SRP011999/SRS1761281/SRX2241867/SRR4419513/SRR4419513.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPIYG-03A-01D_TARGET-10-PAPIYG-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPIYG.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-04A-01D	DNA	EFO	SRS300934	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C07	SRX176205	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-04A-01D GS01042-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48612-FS3_L01.bam	SRR537865	@dbgap@:reads/SRP011999/SRS300934/SRX176205/SRR537865/SRR537865.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-09A-01D	DNA	EFO	SRS300935	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A07	SRX176206	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-09A-01D GS01042-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48613-FS3_L01.bam	SRR537858	@dbgap@:reads/SRP011999/SRS300935/SRX176206/SRR537858/SRR537858.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsPrimary.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHB_NormalVsRecurrent.png	4			
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHB-10A-01D	DNA	EFO	SRS300936	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B07	SRX176204	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHB-10A-01D GS01042-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48614-FS3_L01.bam	SRR537873	@dbgap@:reads/SRP011999/SRS300936/SRX176204/SRR537873/SRR537873.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-04A-01D	DNA	EFO	SRS300937	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A05	SRX176211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-04A-01D GS01042-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48682-FS3_L01.bam	SRR538002	@dbgap@:reads/SRP011999/SRS300937/SRX176211/SRR538002/SRR538002.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-09A-01D	DNA	EFO	SRS300938	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G04	SRX176210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-09A-01D GS01042-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L03.bam	SRR538009	@dbgap@:reads/SRP011999/SRS300938/SRX176210/SRR538009/SRR538009.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJHR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsPrimary.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJHR_NormalVsRecurrent.png	4			
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJHR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJHR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJHR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJHR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJHR-10A-01D	DNA	EFO	SRS300939	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H04	SRX176209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJHR-10A-01D GS01042-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48683-FS3_L01.bam	SRR538016	@dbgap@:reads/SRP011999/SRS300939/SRX176209/SRR538016/SRR538016.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJIB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-04A-01D	DNA	EFO	SRS160213	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_F07	SRX148646	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-04A-01D GS00794-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36379-FS3_L01.bam	SRR498220	@dbgap@:reads/SRP011999/SRS160213/SRX148646/SRR498220/SRR498220.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJIB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-09A-01D	DNA	EFO	SRS287454	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00794-CLS_B06	SRX148647	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-09A-01D GS00794-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS36380-FS3_L01.bam	SRR498212	@dbgap@:reads/SRP011999/SRS287454/SRX148647/SRR498212/SRR498212.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJIB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJIB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsPrimary.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJIB_NormalVsRecurrent.png	4			
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJIB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJIB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJIB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJIB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJIB-14A-01D	DNA	EFO	SRS160214	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_F07	SRX148645	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJIB-14A-01D GS01004-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41210-FS3_L01.bam	SRR498228	@dbgap@:reads/SRP011999/SRS160214/SRX148645/SRR498228/SRR498228.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJRR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D11	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02045-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJRR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-09A-01D	DNA	EFO	SRS517748	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_C03	SRX396781	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-09A-01D GS02064-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71647-FS3_L01.bam	SRR1055924	@dbgap@:reads/SRP011999/SRS517748/SRX396781/SRR1055924/SRR1055924.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJRR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJRR_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsPrimary.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-10A-01D	DNA	EFO	SRS512651	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E11	SRX388788	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-10A-01D GS02045-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70193-FS3_L01.bam	SRR1044987	@dbgap@:reads/SRP011999/SRS512651/SRX388788/SRR1044987/SRR1044987.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJRR_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJRR_NormalVsXenograft1C.png	4			
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJRR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJRR-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJRR-60.1C-01D	DNA	EFO	SRS512677	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D08	SRX388822	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJRR-60.1C-01D GS02045-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70089-FS3_L01.bam	SRR1045052	@dbgap@:reads/SRP011999/SRS512677/SRX388822/SRR1045052/SRR1045052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJRR_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJRR_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJXI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-04A-01D	DNA	EFO	SRS300940	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E09	SRX160838	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-04A-01D GS01042-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L03.bam	SRR524884	@dbgap@:reads/SRP011999/SRS300940/SRX160838/SRR524884/SRR524884.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJXI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-09A-01D	DNA	EFO	SRS300941	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C09	SRX160837	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-09A-01D GS01042-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48780-FS3_L01.bam	SRR524891	@dbgap@:reads/SRP011999/SRS300941/SRX160837/SRR524891/SRR524891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJXI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPJXI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsPrimary.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPJXI_NormalVsRecurrent.png	4			
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPJXI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPJXI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPJXI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPJXI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPJXI-10A-01D	DNA	EFO	SRS300942	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D09	SRX160836	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPJXI-10A-01D GS01042-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48813-FS3_L01.bam	SRR524897	@dbgap@:reads/SRP011999/SRS300942/SRX160836/SRR524897/SRR524897.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPKNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-09A-01D	DNA	EFO	SRS300943	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A05	SRX176584	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-09A-01D GS01043-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48262-FS3_L01.bam	SRR539083	@dbgap@:reads/SRP011999/SRS300943/SRX176584/SRR539083/SRR539083.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPKNC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPKNC_NormalVsPrimary.png	4			
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPKNC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPKNC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPKNC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNC-14A-01D	DNA	EFO	SRS300944	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B05	SRX176583	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPKNC-14A-01D GS01043-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48959-FS3_L01.bam	SRR539091	@dbgap@:reads/SRP011999/SRS300944/SRX176583/SRR539091/SRR539091.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPKNJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPKNJ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPKNJ-09A-01D.indel.vcf	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPKNJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPKNJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-09A-01D	DNA	EFO	SRS1761266	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-09A-01D A59113 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59113	SRX2241852	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPKNJ-09A-01D A59113 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59113_3_lanes_dupsFlagged.bam	SRR4419488	@dbgap@:reads/SRP011999/SRS1761266/SRX2241852/SRR4419488/SRR4419488.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPKNJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPKNJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPKNJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPKNJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPKNJ-10A-01D	DNA	EFO	SRS1761313	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPKNJ-10A-01D A59223 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59223	SRX2241899	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PAPKNJ-10A-01D A59223 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59223_2_lanes_dupsFlagged.bam	SRR4419502	@dbgap@:reads/SRP011999/SRS1761313/SRX2241899/SRR4419502/SRR4419502.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPKNJ-09A-01D_TARGET-10-PAPKNJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPKNJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-04A-02D	DNA	EFO	SRS311970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H12	SRX189929	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-04A-02D GS01043-CLS_H12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49016-FS3_L03.bam	SRR577249	@dbgap@:reads/SRP011999/SRS311970/SRX189929/SRR577249/SRR577249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-09A-01D	DNA	EFO	SRS270535	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A03	SRX189930	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-09A-01D GS01043-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS46502-FS3_L01.bam	SRR577241	@dbgap@:reads/SRP011999/SRS270535/SRX189930/SRR577241/SRR577241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsPrimary.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDL_NormalVsRecurrent.png	4			
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLDL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDL-10A-01D	DNA	EFO	SRS160217	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B03	SRX189928	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDL-10A-01D GS01043-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49504-FS3_L01.bam	SRR577256	@dbgap@:reads/SRP011999/SRS160217/SRX189928/SRR577256/SRR577256.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-04A-01D	DNA	EFO	SRS300945	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A08	SRX495691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-04A-01D GS01055-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50617-FS3_L01.bam	SRR1199294	@dbgap@:reads/SRP011999/SRS300945/SRX495691/SRR1199294/SRR1199294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-09A-01D	DNA	EFO	SRS300946	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F07	SRX495692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-09A-01D GS01055-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50618-FS3_L01.bam	SRR1199287	@dbgap@:reads/SRP011999/SRS300946/SRX495692/SRR1199287/SRR1199287.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLDM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsPrimary.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLDM_NormalVsRecurrent.png	4			
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLDM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLDM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLDM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLDM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLDM-10A-01D	DNA	EFO	SRS300947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_H07	SRX495690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLDM-10A-01D GS01055-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50619-FS3_L03.bam	SRR1199300	@dbgap@:reads/SRP011999/SRS300947/SRX495690/SRR1199300/SRR1199300.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLTZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-04A-01D	DNA	EFO	SRS300948	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E06	SRX176145	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-04A-01D GS01042-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L03.bam	SRR537174	@dbgap@:reads/SRP011999/SRS300948/SRX176145/SRR537174/SRR537174.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLTZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-09A-01D	DNA	EFO	SRS300949	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C06	SRX176146	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-09A-01D GS01042-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48607-FS3_L01.bam	SRR537167	@dbgap@:reads/SRP011999/SRS300949/SRX176146/SRR537167/SRR537167.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLTZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLTZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsPrimary.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLTZ_NormalVsRecurrent.png	4			
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLTZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLTZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLTZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLTZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLTZ-10A-01D	DNA	EFO	SRS300950	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D06	SRX176144	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLTZ-10A-01D GS01042-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48608-FS3_L01.bam	SRR537181	@dbgap@:reads/SRP011999/SRS300950/SRX176144/SRR537181/SRR537181.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLUG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-04A-01D	DNA	EFO	SRS270536	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D06	SRX122356	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-04A-01D GS00812-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37959-FS3_L01.bam	SRR414129	@dbgap@:reads/SRP011999/SRS270536/SRX122356/SRR414129/SRR414129.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLUG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-09A-01D	DNA	EFO	SRS270537	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_D07	SRX122357	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-09A-01D GS00812-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37842-FS3_L01.bam	SRR414121	@dbgap@:reads/SRP011999/SRS270537/SRX122357/SRR414121/SRR414121.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLUG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPLUG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsPrimary.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPLUG_NormalVsRecurrent.png	4			
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPLUG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPLUG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPLUG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPLUG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPLUG-14A-01D	DNA	EFO	SRS270538	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C05	SRX122355	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPLUG-14A-01D GS00812-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37843-FS3_L01.bam	SRR414137	@dbgap@:reads/SRP011999/SRS270538/SRX122355/SRR414137/SRR414137.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMFI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-04A-01D	DNA	EFO	SRS300951	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G10	SRX184470	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-04A-01D GS01055-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50672-FS3_L01.bam	SRR559555	@dbgap@:reads/SRP011999/SRS300951/SRX184470/SRR559555/SRR559555.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMFI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-09A-01D	DNA	EFO	SRS300952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_F10	SRX184471	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-09A-01D GS01055-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50673-FS3_L03.bam	SRR559548	@dbgap@:reads/SRP011999/SRS300952/SRX184471/SRR559548/SRR559548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMFI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMFI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsPrimary.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMFI_NormalVsRecurrent.png	4			
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMFI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMFI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPMFI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMFI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMFI-10A-01D	DNA	EFO	SRS300953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_A09	SRX184469	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMFI-10A-01D GS01055-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50534-FS3_L01.bam	SRR559562	@dbgap@:reads/SRP011999/SRS300953/SRX184469/SRR559562/SRR559562.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMVB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-04A-01D	DNA	EFO	SRS270539	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_G08	SRX121906	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-04A-01D GS00812-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37962-FS3_L01.bam	SRR413540	@dbgap@:reads/SRP011999/SRS270539/SRX121906/SRR413540/SRR413540.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMVB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-09A-01D	DNA	EFO	SRS270540	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E03	SRX121907	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-09A-01D GS00812-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37963-FS3_L01.bam	SRR413532	@dbgap@:reads/SRP011999/SRS270540/SRX121907/SRR413532/SRR413532.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMVB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMVB_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsPrimary.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMVB_NormalVsRecurrent.png	4			
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMVB_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMVB_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPMVB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMVB-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMVB-14A-01D	DNA	EFO	SRS270541	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_F07	SRX121905	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMVB-14A-01D GS00812-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37964-FS3_L01.bam	SRR413548	@dbgap@:reads/SRP011999/SRS270541/SRX121905/SRR413548/SRR413548.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMYD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-03A-01D	DNA	EFO	SRS300954	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G04	SRX170578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-03A-01D GS01043-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48776-FS3_L01.bam	SRR525753	@dbgap@:reads/SRP011999/SRS300954/SRX170578/SRR525753/SRR525753.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPMYD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPMYD_NormalVsPrimary.png	4			
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPMYD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPMYD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPMYD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPMYD-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPMYD-14A-01D	DNA	EFO	SRS300955	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H04	SRX170577	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPMYD-14A-01D GS01043-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48777-FS3_L01.bam	SRR525760	@dbgap@:reads/SRP011999/SRS300955/SRX170577/SRR525760/SRR525760.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNFY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-03A-01D	DNA	EFO	SRS270542	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F03	SRX135059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-03A-01D GS00868-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38053-FS3_L01.bam	SRR452997	@dbgap@:reads/SRP011999/SRS270542/SRX135059/SRR452997/SRR452997.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNFY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-04A-01D	DNA	EFO	SRS270543	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G08	SRX135058	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-04A-01D GS00868-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37747-FS3_L01.bam	SRR453005	@dbgap@:reads/SRP011999/SRS270543/SRX135058/SRR453005/SRR453005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNFY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNFY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsPrimary.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNFY_NormalVsRecurrent.png	4			
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNFY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNFY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPNFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNFY-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNFY-14A-01D	DNA	EFO	SRS270544	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B09	SRX135057	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNFY-14A-01D GS00868-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38054-FS3_L01.bam	SRR453013	@dbgap@:reads/SRP011999/SRS270544/SRX135057/SRR453013/SRR453013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNMY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-09A-01D	DNA	EFO	SRS300956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B04	SRX171540	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-09A-01D GS01043-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49160-FS3_L01.bam	SRR528919	@dbgap@:reads/SRP011999/SRS300956/SRX171540/SRR528919/SRR528919.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNMY_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNMY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsPrimary.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-10A-01D	DNA	EFO	SRS300957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C04	SRX171539	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-10A-01D GS01043-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48962-FS3_L01.bam	SRR528925	@dbgap@:reads/SRP011999/SRS300957/SRX171539/SRR528925/SRR528925.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPNMY_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPNMY_NormalVsRecurrent.png	4			
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPNMY_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPNMY_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPNMY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPNMY-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPNMY-40A-01D	DNA	EFO	SRS300958	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D04	SRX171541	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPNMY-40A-01D GS01043-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48961-FS3_L01.bam	SRR528912	@dbgap@:reads/SRP011999/SRS300958/SRX171541/SRR528912/SRR528912.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPPGN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-03A-01D	DNA	EFO	SRS270545	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C08	SRX120888	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-03A-01D GS00726-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32157-FS3_L01.bam	SRR410278	@dbgap@:reads/SRP011999/SRS270545/SRX120888/SRR410278/SRR410278.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPPGN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-04A-01D	DNA	EFO	SRS270546	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E08	SRX120887	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-04A-01D GS00726-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32382-FS3_L01.bam	SRR410286	@dbgap@:reads/SRP011999/SRS270546/SRX120887/SRR410286/SRR410286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPPGN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPPGN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsPrimary.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPPGN_NormalVsRecurrent.png	4			
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPPGN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPPGN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPPGN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPPGN-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPPGN-14A-01D	DNA	EFO	SRS270547	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D08	SRX120886	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPPGN-14A-01D GS00726-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30744-FS3_L01.bam	SRR410294	@dbgap@:reads/SRP011999/SRS270547/SRX120886/SRR410294/SRR410294.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRCS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-04A-01D	DNA	EFO	SRS270549	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C04	SRX149036	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-04A-01D GS00726-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32821-FS3_L01.bam	SRR499966	@dbgap@:reads/SRP011999/SRS270549/SRX149036/SRR499966/SRR499966.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRCS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A03	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00943-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRCS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-09A-01D	DNA	EFO	SRS287456	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A04	SRX149037	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-09A-01D GS00726-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41584-FS3_L01.bam	SRR499959	@dbgap@:reads/SRP011999/SRS287456/SRX149037/SRR499959/SRR499959.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRCS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRCS_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsPrimary.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRCS_NormalVsRecurrent.png	4			
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRCS_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRCS_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPRCS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRCS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRCS-10A-01D	DNA	EFO	SRS270550	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B04	SRX149035	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRCS-10A-01D GS00726-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32818-FS3_L01.bam	SRR499974	@dbgap@:reads/SRP011999/SRS270550/SRX149035/SRR499974/SRR499974.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRFE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-09A-01D	DNA	EFO	SRS300959	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H09	SRX160610	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-09A-01D GS01043-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L03.bam	SRR523668	@dbgap@:reads/SRP011999/SRS300959/SRX160610/SRR523668/SRR523668.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPRFE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPRFE_NormalVsPrimary.png	4			
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPRFE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPRFE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPRFE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRFE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRFE-10A-01D	DNA	EFO	SRS300960	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A10	SRX160609	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPRFE-10A-01D GS01043-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48903-FS3_L01.bam	SRR523675	@dbgap@:reads/SRP011999/SRS300960/SRX160609/SRR523675/SRR523675.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPRMM-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPRMM.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPRMM-09A-01D.indel.vcf	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPRMM-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPRMM-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-09A-01D	DNA	EFO	SRS1868070	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-09A-01D A59094 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59094	SRX2430617	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PAPRMM-09A-01D A59094 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59094_3_lanes_dupsFlagged.bam	SRR5115246	@dbgap@:reads/SRP011999/SRS1868070/SRX2430617/SRR5115246/SRR5115246.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.quality_tagged.vcf	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPRMM-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPRMM-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPRMM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPRMM-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPRMM-14A-01D	DNA	EFO	SRS1868073	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPRMM-14A-01D A59204 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59204	SRX2430620	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PAPRMM-14A-01D A59204 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59204_2_lanes_dupsFlagged.bam	SRR5115248	@dbgap@:reads/SRP011999/SRS1868073/SRX2430620/SRR5115248/SRR5115248.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPRMM-09A-01D_TARGET-10-PAPRMM-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPRMM.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-04A-01D	DNA	EFO	SRS160222	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B10	SRX130464	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-04A-01D GS00868-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39414-FS3_L01.bam	SRR446666	@dbgap@:reads/SRP011999/SRS160222/SRX130464/SRR446666/SRR446666.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-09A-01D	DNA	EFO	SRS270551	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E10	SRX130465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-09A-01D GS00868-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39415-FS3_L01.bam	SRR446659	@dbgap@:reads/SRP011999/SRS270551/SRX130465/SRR446659/SRR446659.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsPrimary.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPG_NormalVsRecurrent.png	4			
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPSPG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPG-10A-01D	DNA	EFO	SRS160223	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D10	SRX130463	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPG-10A-01D GS00868-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39416-FS3_L01.bam	SRR446673	@dbgap@:reads/SRP011999/SRS160223/SRX130463/SRR446673/SRR446673.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-04A-01D	DNA	EFO	SRS160225	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D02	SRX189699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-04A-01D GS01043-CLS_D02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47623-FS3_L01.bam	SRR576741	@dbgap@:reads/SRP011999/SRS160225/SRX189699/SRR576741/SRR576741.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-09A-01D	DNA	EFO	SRS287457	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C02	SRX189698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-09A-01D GS01043-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47622-FS3_L01.bam	SRR576748	@dbgap@:reads/SRP011999/SRS287457/SRX189698/SRR576748/SRR576748.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPSPN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsPrimary.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPSPN_NormalVsRecurrent.png	4			
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPSPN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPSPN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPSPN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPSPN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPSPN-14A-01D	DNA	EFO	SRS311969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E12	SRX189697	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPSPN-14A-01D GS01043-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47621-FS3_L01.bam	SRR576755	@dbgap@:reads/SRP011999/SRS311969/SRX189697/SRR576755/SRR576755.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPTAT-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPTAT.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPTAT-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PAPTAT.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PAPTAT-09A-01D.indel.vcf	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPTAT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPTAT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-09A-01D	DNA	EFO	SRS1761296	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-09A-01D A59122 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59122	SRX2241882	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PAPTAT-09A-01D A59122 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59122_3_lanes_dupsFlagged.bam	SRR4419485	@dbgap@:reads/SRP011999/SRS1761296/SRX2241882/SRR4419485/SRR4419485.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PAPTAT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PAPTAT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PAPTAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTAT-10A-01D	DNA	EFO	SRS1761345	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PAPTAT-10A-01D A59232 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59232	SRX2241933	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PAPTAT-10A-01D A59232 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59232_2_lanes_dupsFlagged.bam	SRR4419535	@dbgap@:reads/SRP011999/SRS1761345/SRX2241933/SRR4419535/SRR4419535.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PAPTAT-09A-01D_TARGET-10-PAPTAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PAPTAT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPTHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-03A-01D	DNA	EFO	SRS300961	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B10	SRX160614	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-03A-01D GS01043-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48906-FS3_L01.bam	SRR523696	@dbgap@:reads/SRP011999/SRS300961/SRX160614/SRR523696/SRR523696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPTHJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTHJ_NormalVsPrimary.png	4			
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTHJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTHJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPTHJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTHJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTHJ-10A-01D	DNA	EFO	SRS300962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C10	SRX160613	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTHJ-10A-01D GS01043-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48904-FS3_L01.bam	SRR523703	@dbgap@:reads/SRP011999/SRS300962/SRX160613/SRR523703/SRR523703.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPTLM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-09A-01D	DNA	EFO	SRS300963	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D10	SRX160089	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-09A-01D GS01043-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48908-FS3_L01.bam	SRR521793	@dbgap@:reads/SRP011999/SRS300963/SRX160089/SRR521793/SRR521793.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPTLM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPTLM_NormalVsPrimary.png	4			
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPTLM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPTLM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPTLM-10A-01D	DNA	EFO	SRS300964	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E10	SRX160088	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPTLM-10A-01D GS01043-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48907-FS3_L01.bam	SRR521800	@dbgap@:reads/SRP011999/SRS300964/SRX160088/SRR521800/SRR521800.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVNW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-09A-01D	DNA	EFO	SRS300965	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F10	SRX160842	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-09A-01D GS01043-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49502-FS3_L01.bam	SRR524920	@dbgap@:reads/SRP011999/SRS300965/SRX160842/SRR524920/SRR524920.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVNW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVNW_NormalVsPrimary.png	4			
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVNW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVNW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVNW-10A-01D	DNA	EFO	SRS300966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G10	SRX160841	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVNW-10A-01D GS01043-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49501-FS3_L01.bam	SRR524927	@dbgap@:reads/SRP011999/SRS300966/SRX160841/SRR524927/SRR524927.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVTA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-04A-01D	DNA	EFO	SRS270553	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D07	SRX148727	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-04A-01D GS00726-CLS_D07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32420-FS3_L01.bam	SRR498765	@dbgap@:reads/SRP011999/SRS270553/SRX148727/SRR498765/SRR498765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVTA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C04	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00943-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVTA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-09A-01D	DNA	EFO	SRS287458	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B07	SRX148726	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-09A-01D GS00726-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41714-FS3_L01.bam	SRR498773	@dbgap@:reads/SRP011999/SRS287458/SRX148726/SRR498773/SRR498773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVTA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPVTA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsPrimary.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPVTA_NormalVsRecurrent.png	4			
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPVTA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPVTA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPVTA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPVTA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPVTA-10A-01D	DNA	EFO	SRS270554	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C07	SRX148725	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPVTA-10A-01D GS00726-CLS_C07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32389-FS3_L01.bam	SRR498781	@dbgap@:reads/SRP011999/SRS270554/SRX148725/SRR498781/SRR498781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZNK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-04A-01D	DNA	EFO	SRS160228	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E03	SRX121716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-04A-01D GS00726-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32983-FS3_L01.bam	SRR412765	@dbgap@:reads/SRP011999/SRS160228/SRX121716/SRR412765/SRR412765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZNK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-09A-01D	DNA	EFO	SRS287459	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C03	SRX121715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-09A-01D GS00726-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32982-FS3_L01.bam	SRR412773	@dbgap@:reads/SRP011999/SRS287459/SRX121715/SRR412773/SRR412773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZNK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZNK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsPrimary.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZNK_NormalVsRecurrent.png	4			
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZNK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZNK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZNK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZNK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZNK-10A-01D	DNA	EFO	SRS160229	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D03	SRX121714	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZNK-10A-01D GS00726-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32981-FS3_L01.bam	SRR412781	@dbgap@:reads/SRP011999/SRS160229/SRX121714/SRR412781/SRR412781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32418-FS3_L01.bam	SRR502718	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR502718/SRR502718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-04A-01D	DNA	EFO	SRS270556	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C09	SRX150735	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-04A-01D GS00726-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57664-FS3_L01.bam	SRR1006578	@dbgap@:reads/SRP011999/SRS270556/SRX150735/SRR1006578/SRR1006578.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41577-FS3_L01.bam	SRR502726	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR502726/SRR502726.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-09A-01D	DNA	EFO	SRS287460	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G04	SRX150734	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-09A-01D GS00943-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57666-FS3_L01.bam	SRR1006586	@dbgap@:reads/SRP011999/SRS287460/SRX150734/SRR1006586/SRR1006586.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS42113-FS3_L01.bam	SRR502734	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR502734/SRR502734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAPZST_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsPrimary.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAPZST_NormalVsRecurrent.png	4			
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAPZST_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAPZST_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAPZST	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAPZST-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAPZST-14A-01D	DNA	EFO	SRS270557	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01004-CLS_G09	SRX150733	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAPZST-14A-01D GS01004-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS57775-FS3_L01.bam	SRR1006594	@dbgap@:reads/SRP011999/SRS270557/SRX150733/SRR1006594/SRR1006594.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARACA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-04A-01D	DNA	EFO	SRS270558	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-04A-01D GS00868-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B05	SRX130451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-04A-01D GS00868-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39124-FS3_L01.bam	SRR446606	@dbgap@:reads/SRP011999/SRS270558/SRX130451/SRR446606/SRR446606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARACA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-09A-01D	DNA	EFO	SRS270559	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-09A-01D GS00868-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C09	SRX130450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-09A-01D GS00868-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39123-FS3_L01.bam	SRR446614	@dbgap@:reads/SRP011999/SRS270559/SRX130450/SRR446614/SRR446614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARACA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARACA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsPrimary.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARACA_NormalVsRecurrent.png	4			
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARACA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARACA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARACA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARACA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARACA-14A-01D	DNA	EFO	SRS270560	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARACA-14A-01D GS00868-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G05	SRX130449	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARACA-14A-01D GS00868-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39254-FS3_L01.bam	SRR446622	@dbgap@:reads/SRP011999/SRS270560/SRX130449/SRR446622/SRR446622.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARAKF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-04A-01D	DNA	EFO	SRS160231	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H05	SRX131869	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-04A-01D GS00868-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39412-FS3_L01.bam	SRR449133	@dbgap@:reads/SRP011999/SRS160231/SRX131869/SRR449133/SRR449133.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARAKF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-09A-01D	DNA	EFO	SRS270561	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B04	SRX131868	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-09A-01D GS00868-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L03.bam	SRR449141	@dbgap@:reads/SRP011999/SRS270561/SRX131868/SRR449141/SRR449141.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARAKF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARAKF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsPrimary.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARAKF_NormalVsRecurrent.png	4			
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARAKF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARAKF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARAKF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAKF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAKF-10A-01D	DNA	EFO	SRS160232	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A05	SRX131867	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARAKF-10A-01D GS00868-CLS_A05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39413-FS3_L01.bam	SRR449148	@dbgap@:reads/SRP011999/SRS160232/SRX131867/SRR449148/SRR449148.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARAPE-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARAPE.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARAPE-09A-01D.indel.vcf	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.quality_tagged.vcf	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARAPE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARAPE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-09A-01D	DNA	EFO	SRS1761334	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-09A-01D A59076 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59076	SRX2241921	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARAPE-09A-01D A59076 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59076_3_lanes_dupsFlagged.bam	SRR4419509	@dbgap@:reads/SRP011999/SRS1761334/SRX2241921/SRR4419509/SRR4419509.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.quality_tagged.vcf	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARAPE-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARAPE-14A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARAPE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARAPE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARAPE-14A-01D	DNA	EFO	SRS1761321	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARAPE-14A-01D A59186 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59186	SRX2241907	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARAPE-14A-01D A59186 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59186_2_lanes_dupsFlagged.bam	SRR4419497	@dbgap@:reads/SRP011999/SRS1761321/SRX2241907/SRR4419497/SRR4419497.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARAPE-09A-01D_TARGET-10-PARAPE-14A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARAPE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARARJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-09A-01D	DNA	EFO	SRS300967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H10	SRX171013	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-09A-01D GS01043-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49503-FS3_L01.bam	SRR527506	@dbgap@:reads/SRP011999/SRS300967/SRX171013/SRR527506/SRR527506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARARJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARARJ_NormalVsPrimary.png	4			
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARARJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARARJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARARJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARARJ-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARARJ-14A-01D	DNA	EFO	SRS300968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A11	SRX171012	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARARJ-14A-01D GS01043-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48268-FS3_L01.bam	SRR527513	@dbgap@:reads/SRP011999/SRS300968/SRX171012/SRR527513/SRR527513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARBGL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARBGL.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARBGL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARBGL.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARBGL-09A-01D.indel.vcf	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARBGL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARBGL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-09A-01D	DNA	EFO	SRS1761306	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-09A-01D A59123 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59123	SRX2241892	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARBGL-09A-01D A59123 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59123_3_lanes_dupsFlagged.bam	SRR4419551	@dbgap@:reads/SRP011999/SRS1761306/SRX2241892/SRR4419551/SRR4419551.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARBGL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARBGL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARBGL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBGL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBGL-10A-01D	DNA	EFO	SRS1761336	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARBGL-10A-01D A59233 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59233	SRX2241924	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARBGL-10A-01D A59233 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59233_2_lanes_dupsFlagged.bam	SRR4419503	@dbgap@:reads/SRP011999/SRS1761336/SRX2241924/SRR4419503/SRR4419503.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARBGL-09A-01D_TARGET-10-PARBGL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARBGL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBRK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-04A-01D	DNA	EFO	SRS160234	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E06	SRX147853	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-04A-01D GS00726-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32904-FS3_L01.bam	SRR496734	@dbgap@:reads/SRP011999/SRS160234/SRX147853/SRR496734/SRR496734.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBRK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_H03	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00943-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBRK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-09A-01D	DNA	EFO	SRS287461	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C06	SRX147854	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-09A-01D GS00726-CLS_C06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L03.bam	SRR496727	@dbgap@:reads/SRP011999/SRS287461/SRX147854/SRR496727/SRR496727.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBRK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBRK_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsPrimary.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBRK_NormalVsRecurrent.png	4			
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBRK_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBRK_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBRK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBRK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBRK-10A-01D	DNA	EFO	SRS160235	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D06	SRX147852	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBRK-10A-01D GS00726-CLS_D06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32159-FS3_L01.bam	SRR496742	@dbgap@:reads/SRP011999/SRS160235/SRX147852/SRR496742/SRR496742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBVI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-04A-01D	DNA	EFO	SRS270563	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B02	SRX170599	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-04A-01D GS01042-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48671-FS3_L01.bam	SRR525612	@dbgap@:reads/SRP011999/SRS270563/SRX170599/SRR525612/SRR525612.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBVI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-09A-01D	DNA	EFO	SRS287462	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A12	SRX170598	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-09A-01D GS01042-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48673-FS3_L01.bam	SRR525619	@dbgap@:reads/SRP011999/SRS287462/SRX170598/SRR525619/SRR525619.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBVI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARBVI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsPrimary.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARBVI_NormalVsRecurrent.png	4			
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARBVI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARBVI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARBVI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARBVI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARBVI-10A-01D	DNA	EFO	SRS270564	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A02	SRX170597	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARBVI-10A-01D GS01042-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48672-FS3_L01.bam	SRR525626	@dbgap@:reads/SRP011999/SRS270564/SRX170597/SRR525626/SRR525626.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARCHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-03A-01D	DNA	EFO	SRS300969	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E06	SRX160076	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-03A-01D GS01043-CLS_E06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48219-FS3_L01.bam	SRR521700	@dbgap@:reads/SRP011999/SRS300969/SRX160076/SRR521700/SRR521700.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARCHB_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARCHB_NormalVsPrimary.png	4			
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARCHB_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARCHB_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARCHB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARCHB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARCHB-10A-01D	DNA	EFO	SRS300970	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F06	SRX160075	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARCHB-10A-01D GS01043-CLS_F06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48220-FS3_L01.bam	SRR521707	@dbgap@:reads/SRP011999/SRS300970/SRX160075/SRR521707/SRR521707.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARDWE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-03A-01D	DNA	EFO	SRS270565	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C01	SRX120492	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-03A-01D GS00812-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37960-FS3_L01.bam	SRR409227	@dbgap@:reads/SRP011999/SRS270565/SRX120492/SRR409227/SRR409227.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARDWE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-04A-01D	DNA	EFO	SRS270566	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_C04	SRX120493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-04A-01D GS00812-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37956-FS3_L01.bam	SRR409219	@dbgap@:reads/SRP011999/SRS270566/SRX120493/SRR409219/SRR409219.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARDWE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARDWE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsPrimary.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARDWE_NormalVsRecurrent.png	4			
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARDWE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARDWE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARDWE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWE-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWE-14A-01D	DNA	EFO	SRS270567	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00812-CLS_E04	SRX120491	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARDWE-14A-01D GS00812-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37961-FS3_L01.bam	SRR409235	@dbgap@:reads/SRP011999/SRS270567/SRX120491/SRR409235/SRR409235.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARDWN-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARDWN.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARDWN-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARDWN.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARDWN-09A-01D.indel.vcf	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARDWN-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARDWN-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-09A-01D	DNA	EFO	SRS1761277	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-09A-01D A59084 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59084	SRX2241863	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARDWN-09A-01D A59084 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59084_3_lanes_dupsFlagged.bam	SRR4419544	@dbgap@:reads/SRP011999/SRS1761277/SRX2241863/SRR4419544/SRR4419544.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARDWN-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARDWN-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARDWN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARDWN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARDWN-10A-01D	DNA	EFO	SRS1761269	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARDWN-10A-01D A59194 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59194	SRX2241855	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARDWN-10A-01D A59194 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59194_2_lanes_dupsFlagged.bam	SRR4419468	@dbgap@:reads/SRP011999/SRS1761269/SRX2241855/SRR4419468/SRR4419468.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARDWN-09A-01D_TARGET-10-PARDWN-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARDWN.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARELH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-03A-01D	DNA	EFO	SRS489796	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-03A-01D GS01997-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F10	SRX363060	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-03A-01D GS01997-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64811-FS3_L01.bam	SRR1007742	@dbgap@:reads/SRP011999/SRS489796/SRX363060/SRR1007742/SRR1007742.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARELH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARELH_NormalVsPrimary.png	4			
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARELH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARELH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARELH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARELH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARELH-10A-01D	DNA	EFO	SRS489795	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARELH-10A-01D GS01997-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G10	SRX363059	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARELH-10A-01D GS01997-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64810-FS3_L01.bam	SRR1007749	@dbgap@:reads/SRP011999/SRS489795/SRX363059/SRR1007749/SRR1007749.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFLV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-04A-01D	DNA	EFO	SRS270569	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_F02	SRX189932	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-04A-01D GS01043-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L01.bam	SRR577269	@dbgap@:reads/SRP011999/SRS270569/SRX189932/SRR577269/SRR577269.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFLV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-09A-01D	DNA	EFO	SRS287463	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E02	SRX189933	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-09A-01D GS01043-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48995-FS3_L03.bam	SRR577262	@dbgap@:reads/SRP011999/SRS287463/SRX189933/SRR577262/SRR577262.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFLV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFLV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsPrimary.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFLV_NormalVsRecurrent.png	4			
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFLV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFLV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARFLV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFLV-14A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFLV-14A-01D	DNA	EFO	SRS311962	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G12	SRX189931	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFLV-14A-01D GS01043-CLS_G12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49011-FS3_L01.bam	SRR577276	@dbgap@:reads/SRP011999/SRS311962/SRX189931/SRR577276/SRR577276.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFTR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-04A-01D	DNA	EFO	SRS160237	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A04	SRX131670	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-04A-01D GS00869-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39251-FS3_L01.bam	SRR449017	@dbgap@:reads/SRP011999/SRS160237/SRX131670/SRR449017/SRR449017.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFTR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-09A-01D	DNA	EFO	SRS270571	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H07	SRX131669	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-09A-01D GS00869-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39250-FS3_L01.bam	SRR449024	@dbgap@:reads/SRP011999/SRS270571/SRX131669/SRR449024/SRR449024.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFTR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARFTR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsPrimary.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARFTR_NormalVsRecurrent.png	4			
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARFTR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARFTR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARFTR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFTR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFTR-10A-01D	DNA	EFO	SRS160238	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C02	SRX131668	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARFTR-10A-01D GS00869-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39127-FS3_L01.bam	SRR449031	@dbgap@:reads/SRP011999/SRS160238/SRX131668/SRR449031/SRR449031.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARFWD-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARFWD.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARFWD-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARFWD.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARFWD-03A-01D.indel.vcf	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARFWD-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARFWD-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-03A-01D	DNA	EFO	SRS1761276	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-03A-01D A59125 library	PAIRED	GENOMIC	WGS	RANDOM	422	A59125	SRX2241862	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PARFWD-03A-01D A59125 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59125_3_lanes_dupsFlagged.bam	SRR4419531	@dbgap@:reads/SRP011999/SRS1761276/SRX2241862/SRR4419531/SRR4419531.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARFWD-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARFWD-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARFWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARFWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARFWD-10A-01D	DNA	EFO	SRS1761331	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARFWD-10A-01D A59235 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59235	SRX2241918	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PARFWD-10A-01D A59235 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59235_2_lanes_dupsFlagged.bam	SRR4419487	@dbgap@:reads/SRP011999/SRS1761331/SRX2241918/SRR4419487/SRR4419487.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARFWD-03A-01D_TARGET-10-PARFWD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARFWD.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGFV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-03A-01D	DNA	EFO	SRS300971	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B03	SRX176579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-03A-01D GS01042-CLS_B03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47317-FS3_L01.bam	SRR539055	@dbgap@:reads/SRP011999/SRS300971/SRX176579/SRR539055/SRR539055.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGFV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-04A-01D	DNA	EFO	SRS300972	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D03	SRX176580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-04A-01D GS01042-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48144-FS3_L01.bam	SRR539048	@dbgap@:reads/SRP011999/SRS300972/SRX176580/SRR539048/SRR539048.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGFV_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGFV_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsPrimary.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGFV_NormalVsRecurrent.png	4			
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGFV_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGFV_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGFV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGFV-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGFV-14A-01D	DNA	EFO	SRS300973	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C03	SRX176578	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGFV-14A-01D GS01042-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48182-FS3_L03.bam	SRR539062	@dbgap@:reads/SRP011999/SRS300973/SRX176578/SRR539062/SRR539062.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGHW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-04A-01D	DNA	EFO	SRS160240	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G09	SRX120315	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-04A-01D GS00726-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32177-FS3_L01.bam	SRR408861	@dbgap@:reads/SRP011999/SRS160240/SRX120315/SRR408861/SRR408861.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGHW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-09A-01D	DNA	EFO	SRS287464	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E09	SRX120316	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-09A-01D GS00726-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32381-FS3_L01.bam	SRR408853	@dbgap@:reads/SRP011999/SRS287464/SRX120316/SRR408853/SRR408853.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGHW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGHW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsPrimary.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGHW_NormalVsRecurrent.png	4			
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGHW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGHW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGHW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGHW-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGHW-14A-01D	DNA	EFO	SRS270572	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F09	SRX120314	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGHW-14A-01D GS00726-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32413-FS3_L01.bam	SRR408869	@dbgap@:reads/SRP011999/SRS270572/SRX120314/SRR408869/SRR408869.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-03A-01D	DNA	EFO	SRS270573	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-03A-01D GS00726-CLS_H07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H07	SRX148716	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-03A-01D GS00726-CLS_H07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30740-FS3_L01.bam	SRR498694	@dbgap@:reads/SRP011999/SRS270573/SRX148716/SRR498694/SRR498694.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-04A-01D	DNA	EFO	SRS270574	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-04A-01D GS00726-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B08	SRX148717	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-04A-01D GS00726-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32151-FS3_L01.bam	SRR498686	@dbgap@:reads/SRP011999/SRS270574/SRX148717/SRR498686/SRR498686.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00943-CLS_E04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E04	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00943-CLS_E04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGML_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsPrimary.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGML_NormalVsRecurrent.png	4			
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGML_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGML_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGML	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGML-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGML-10A-01D	DNA	EFO	SRS270575	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGML-10A-01D GS00726-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A08	SRX148715	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGML-10A-01D GS00726-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41712-FS3_L01.bam	SRR498702	@dbgap@:reads/SRP011999/SRS270575/SRX148715/SRR498702/SRR498702.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGVZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-03A-01D	DNA	EFO	SRS270576	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F08	SRX157454	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-03A-01D GS00726-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32388-FS3_L01.bam	SRR517929	@dbgap@:reads/SRP011999/SRS270576/SRX157454/SRR517929/SRR517929.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGVZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-04A-01D	DNA	EFO	SRS270577	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H08	SRX157455	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-04A-01D GS00726-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS30743-FS3_L01.bam	SRR517921	@dbgap@:reads/SRP011999/SRS270577/SRX157455/SRR517921/SRR517921.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGVZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARGVZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsPrimary.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARGVZ_NormalVsRecurrent.png	4			
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARGVZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARGVZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARGVZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARGVZ-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARGVZ-14A-01D	DNA	EFO	SRS270578	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F04	SRX157453	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARGVZ-14A-01D GS00943-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41579-FS3_L01.bam	SRR517937	@dbgap@:reads/SRP011999/SRS270578/SRX157453/SRR517937/SRR517937.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARHUM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-09A-01D	DNA	EFO	SRS300974	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A06	SRX160097	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-09A-01D GS01043-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48967-FS3_L01.bam	SRR521850	@dbgap@:reads/SRP011999/SRS300974/SRX160097/SRR521850/SRR521850.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARHUM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARHUM_NormalVsPrimary.png	4			
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARHUM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARHUM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARHUM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARHUM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARHUM-10A-01D	DNA	EFO	SRS300975	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B06	SRX160096	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARHUM-10A-01D GS01043-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48968-FS3_L01.bam	SRR521857	@dbgap@:reads/SRP011999/SRS300975/SRX160096/SRR521857/SRR521857.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIAD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-03A-01D	DNA	EFO	SRS160242	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C11	SRX176582	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-03A-01D GS01043-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47629-FS3_L01.bam	SRR539069	@dbgap@:reads/SRP011999/SRS160242/SRX176582/SRR539069/SRR539069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIAD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIAD_NormalVsPrimary.png	4			
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIAD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIAD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIAD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIAD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIAD-10A-01D	DNA	EFO	SRS160244	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D11	SRX176581	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIAD-10A-01D GS01043-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47630-FS3_L01.bam	SRR539076	@dbgap@:reads/SRP011999/SRS160244/SRX176581/SRR539076/SRR539076.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-09A-01D	DNA	EFO	SRS502957	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_B02	SRX378162	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-09A-01D GS02032-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69121-FS3_L01.bam	SRR1030602	@dbgap@:reads/SRP011999/SRS502957/SRX378162/SRR1030602/SRR1030602.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsPrimary.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-14A-01D	DNA	EFO	SRS502956	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS02032-CLS_C02	SRX378161	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-14A-01D GS02032-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69120-FS3_L01.bam	SRR1030594	@dbgap@:reads/SRP011999/SRS502956/SRX378161/SRR1030594/SRR1030594.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft1B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft1B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.1B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.1B-01D	DNA	EFO	SRS509606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_C08	SRX385496	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.1B-01D GS02039-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67289-FS3_L01.bam	SRR1041013	@dbgap@:reads/SRP011999/SRS509606/SRX385496/SRR1041013/SRR1041013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft1B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft1B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft2A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft2A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.2A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.2A-01D	DNA	EFO	SRS509605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D08	SRX385495	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.2A-01D GS02039-CLS_D08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69329-FS3_L01.bam	SRR1041006	@dbgap@:reads/SRP011999/SRS509605/SRX385495/SRR1041006/SRR1041006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft2A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft2A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft3A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3A-01D	DNA	EFO	SRS509604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E08	SRX385494	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3A-01D GS02039-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69328-FS3_L01.bam	SRR1040998	@dbgap@:reads/SRP011999/SRS509604/SRX385494/SRR1040998/SRR1040998.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft3B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft3B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.3B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.3B-01D	DNA	EFO	SRS509603	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F08	SRX385493	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.3B-01D GS02039-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69327-FS3_L01.bam	SRR1040991	@dbgap@:reads/SRP011999/SRS509603/SRX385493/SRR1040991/SRR1040991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft3B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft3B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft4A.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft4A.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.4A	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.4A-01D	DNA	EFO	SRS509611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G08	SRX385502	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.4A-01D GS02039-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69326-FS3_L01.bam	SRR1041050	@dbgap@:reads/SRP011999/SRS509611/SRX385502/SRR1041050/SRR1041050.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft4A.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft4A.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft5B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft5B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.5B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.5B-01D	DNA	EFO	SRS510479	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_H08	SRX386465	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.5B-01D GS02039-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69509-FS3_L01.bam	SRR1042157	@dbgap@:reads/SRP011999/SRS510479/SRX386465/SRR1042157/SRR1042157.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft5B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft5B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIKN_NormalVsXenograft7B.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIKN_NormalVsXenograft7B.png	4			
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIKN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood T Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIKN-60.7B	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIKN-60.7B-01D	DNA	EFO	SRS510480	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_A09	SRX386466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIKN-60.7B-01D GS02039-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69508-FS3_L01.bam	SRR1042164	@dbgap@:reads/SRP011999/SRS510480/SRX386466/SRR1042164/SRR1042164.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIKN_NormalVsXenograft7B.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIKN_NormalVsXenograft7B.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02064-CLS_H09	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02064-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-09A-01D	DNA	EFO	SRS517781	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F11	SRX396802	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-09A-01D GS02045-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71692-FS3_L01.bam	SRR1055964	@dbgap@:reads/SRP011999/SRS517781/SRX396802/SRR1055964/SRR1055964.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft7C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft9C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft13C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft21C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft23C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsPrimary.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-14A-01D	DNA	EFO	SRS513117	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G11	SRX389435	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-14A-01D GS02045-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70126-FS3_L01.bam	SRR1046052	@dbgap@:reads/SRP011999/SRS513117/SRX389435/SRR1046052/SRR1046052.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft5C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.5C-01D	DNA	EFO	SRS511679	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E08	SRX387787	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.5C-01D GS02045-CLS_E08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70349-FS3_L01.bam	SRR1043931	@dbgap@:reads/SRP011999/SRS511679/SRX387787/SRR1043931/SRR1043931.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft7C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft7C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.7C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.7C-01D	DNA	EFO	SRS512675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F08	SRX388819	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.7C-01D GS02045-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70384-FS3_L01.bam	SRR1045044	@dbgap@:reads/SRP011999/SRS512675/SRX388819/SRR1045044/SRR1045044.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft7C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft7C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft9C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft9C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.9C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.9C-01D	DNA	EFO	SRS512674	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G08	SRX388815	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.9C-01D GS02045-CLS_G08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70748-FS3_L01.bam	SRR1045033	@dbgap@:reads/SRP011999/SRS512674/SRX388815/SRR1045033/SRR1045033.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft9C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft9C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft11C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.11C-01D	DNA	EFO	SRS512673	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H08	SRX388814	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.11C-01D GS02045-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70348-FS3_L01.bam	SRR1045026	@dbgap@:reads/SRP011999/SRS512673/SRX388814/SRR1045026/SRR1045026.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft13C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft13C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.13C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.13C-01D	DNA	EFO	SRS512947	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A09	SRX389274	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.13C-01D GS02045-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70350-FS3_L01.bam	SRR1045540	@dbgap@:reads/SRP011999/SRS512947/SRX389274/SRR1045540/SRR1045540.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft13C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft13C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft21C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft21C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.21C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.21C-01D	DNA	EFO	SRS513013	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_B09	SRX389339	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.21C-01D GS02045-CLS_B09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70361-FS3_L01.bam	SRR1045901	@dbgap@:reads/SRP011999/SRS513013/SRX389339/SRR1045901/SRR1045901.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft21C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft21C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARIPA_NormalVsXenograft23C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARIPA_NormalVsXenograft23C.png	4			
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARIPA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARIPA-60.23C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARIPA-60.23C-01D	DNA	EFO	SRS513121	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_C09	SRX389438	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARIPA-60.23C-01D GS02045-CLS_C09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70125-FS3_L01.bam	SRR1046069	@dbgap@:reads/SRP011999/SRS513121/SRX389438/SRR1046069/SRR1046069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARIPA_NormalVsXenograft23C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARIPA_NormalVsXenograft23C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARJLA-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARJLA.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARJLA-09A-01D.indel.vcf	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARJLA-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARJLA-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-09A-01D	DNA	EFO	SRS1761318	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-09A-01D A59091 library	PAIRED	GENOMIC	WGS	RANDOM	423	A59091	SRX2241905	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARJLA-09A-01D A59091 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59091_3_lanes_dupsFlagged.bam	SRR4419537	@dbgap@:reads/SRP011999/SRS1761318/SRX2241905/SRR4419537/SRR4419537.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARJLA-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARJLA-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARJLA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJLA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJLA-10A-01D	DNA	EFO	SRS1761332	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARJLA-10A-01D A59201 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59201	SRX2241917	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARJLA-10A-01D A59201 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59201_2_lanes_dupsFlagged.bam	SRR4419476	@dbgap@:reads/SRP011999/SRS1761332/SRX2241917/SRR4419476/SRR4419476.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARJLA-09A-01D_TARGET-10-PARJLA-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARJLA.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJSR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-04A-01D	DNA	EFO	SRS270580	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H02	SRX189695	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-04A-01D GS01043-CLS_H02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50635-FS3_L01.bam	SRR576725	@dbgap@:reads/SRP011999/SRS270580/SRX189695/SRR576725/SRR576725.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJSR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-09A-02D	DNA	EFO	SRS311968	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B12	SRX189696	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-09A-02D GS01055-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50717-FS3_L03.bam	SRR576718	@dbgap@:reads/SRP011999/SRS311968/SRX189696/SRR576718/SRR576718.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJSR_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJSR_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsPrimary.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJSR_NormalVsRecurrent.png	4			
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJSR_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJSR_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARJSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJSR-14A	organism part	EFO	Bone Marrow	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJSR-14A-01D	DNA	EFO	SRS270581	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G02	SRX189694	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJSR-14A-01D GS01043-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50634-FS3_L01.bam	SRR576733	@dbgap@:reads/SRP011999/SRS270581/SRX189694/SRR576733/SRR576733.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJZZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-04A-01D	DNA	EFO	SRS160246	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_C03	SRX147971	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-04A-01D GS00943-CLS_C03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41583-FS3_L01.bam	SRR496891	@dbgap@:reads/SRP011999/SRS160246/SRX147971/SRR496891/SRR496891.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJZZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-09A-01D	DNA	EFO	SRS287466	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G04	SRX147970	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-09A-01D GS00726-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32814-FS3_L01.bam	SRR496898	@dbgap@:reads/SRP011999/SRS287466/SRX147970/SRR496898/SRR496898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJZZ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARJZZ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsPrimary.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARJZZ_NormalVsRecurrent.png	4			
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARJZZ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARJZZ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARJZZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARJZZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARJZZ-10A-01D	DNA	EFO	SRS160247	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H04	SRX147969	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARJZZ-10A-01D GS00726-CLS_H04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32813-FS3_L01.bam	SRR496906	@dbgap@:reads/SRP011999/SRS160247/SRX147969/SRR496906/SRR496906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLAF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-09A-01D	DNA	EFO	SRS300976	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_E11	SRX189693	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-09A-01D GS01043-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50633-FS3_L01.bam	SRR576704	@dbgap@:reads/SRP011999/SRS300976/SRX189693/SRR576704/SRR576704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLAF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLAF_NormalVsPrimary.png	4			
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLAF-10A-01D	DNA	EFO	SRS300977	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01088-CLS_H11	SRX189692	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLAF-10A-01D GS01088-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52832-FS3_L01.bam	SRR576711	@dbgap@:reads/SRP011999/SRS300977/SRX189692/SRR576711/SRR576711.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLEK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-03A-01D	DNA	EFO	SRS300978	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G11	SRX176573	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-03A-01D GS01043-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47627-FS3_L01.bam	SRR539006	@dbgap@:reads/SRP011999/SRS300978/SRX176573/SRR539006/SRR539006.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLEK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLEK_NormalVsPrimary.png	4			
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLEK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLEK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLEK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLEK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLEK-10A-01D	DNA	EFO	SRS300979	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_H11	SRX176572	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLEK-10A-01D GS01043-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47628-FS3_L01.bam	SRR539013	@dbgap@:reads/SRP011999/SRS300979/SRX176572/SRR539013/SRR539013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLZG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-03A-01D	DNA	EFO	SRS270582	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B05	SRX122688	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-03A-01D GS00869-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37745-FS3_L01.bam	SRR415005	@dbgap@:reads/SRP011999/SRS270582/SRX122688/SRR415005/SRR415005.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLZG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-04A-01D	DNA	EFO	SRS270583	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E02	SRX122687	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-04A-01D GS00869-CLS_E02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37979-FS3_L01.bam	SRR415013	@dbgap@:reads/SRP011999/SRS270583/SRX122687/SRR415013/SRR415013.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLZG_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARLZG_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsPrimary.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARLZG_NormalVsRecurrent.png	4			
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARLZG_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARLZG_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARLZG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARLZG-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARLZG-14A-01D	DNA	EFO	SRS270584	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F10	SRX122686	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARLZG-14A-01D GS00869-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37746-FS3_L01.bam	SRR415021	@dbgap@:reads/SRP011999/SRS270584/SRX122686/SRR415021/SRR415021.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMSP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-04A-01D	DNA	EFO	SRS300980	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01090-CLS_C12	SRX191128	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-04A-01D GS01090-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52555-FS3_L01.bam	SRR579491	@dbgap@:reads/SRP011999/SRS300980/SRX191128/SRR579491/SRR579491.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-09A-01D	DNA	EFO	SRS300981	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_B07	SRX191127	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-09A-01D GS01055-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50623-FS3_L01.bam	SRR579498	@dbgap@:reads/SRP011999/SRS300981/SRX191127/SRR579498/SRR579498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMSP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMSP_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsPrimary.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMSP_NormalVsRecurrent.png	4			
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMSP_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMSP_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARMSP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMSP-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMSP-14A-01D	DNA	EFO	SRS300982	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01055-CLS_G09	SRX191126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMSP-14A-01D GS01055-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS50624-FS3_L01.bam	SRR579505	@dbgap@:reads/SRP011999/SRS300982/SRX191126/SRR579505/SRR579505.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-09A-01D	DNA	EFO	SRS300983	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H09	SRX170593	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-09A-01D GS01042-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48808-FS3_L01.bam	SRR525513	@dbgap@:reads/SRP011999/SRS300983/SRX170593/SRR525513/SRR525513.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARMXF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARMXF_NormalVsPrimary.png	4			
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARMXF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARMXF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARMXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARMXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARMXF-10A-01D	DNA	EFO	SRS300984	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A10	SRX170592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARMXF-10A-01D GS01042-CLS_A10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48809-FS3_L01.bam	SRR525520	@dbgap@:reads/SRP011999/SRS300984/SRX170592/SRR525520/SRR525520.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNMF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-03A-01D	DNA	EFO	SRS270585	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H08	SRX122371	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-03A-01D GS00869-CLS_H08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37977-FS3_L01.bam	SRR414249	@dbgap@:reads/SRP011999/SRS270585/SRX122371/SRR414249/SRR414249.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNMF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-04A-01D	DNA	EFO	SRS270586	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H06	SRX122372	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-04A-01D GS00869-CLS_H06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37744-FS3_L01.bam	SRR414241	@dbgap@:reads/SRP011999/SRS270586/SRX122372/SRR414241/SRR414241.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNMF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNMF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsPrimary.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNMF_NormalVsRecurrent.png	4			
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNMF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNMF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARNMF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNMF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNMF-10A-01D	DNA	EFO	SRS270587	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B11	SRX122370	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNMF-10A-01D GS00869-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37978-FS3_L01.bam	SRR414257	@dbgap@:reads/SRP011999/SRS270587/SRX122370/SRR414257/SRR414257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNSH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-03A-01D	DNA	EFO	SRS270588	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_A07	SRX131591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-03A-01D GS00869-CLS_A07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39244-FS3_L01.bam	SRR448506	@dbgap@:reads/SRP011999/SRS270588/SRX131591/SRR448506/SRR448506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNSH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-04A-01D	DNA	EFO	SRS270589	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D03	SRX131592	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-04A-01D GS00869-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37972-FS3_L01.bam	SRR448498	@dbgap@:reads/SRP011999/SRS270589/SRX131592/SRR448498/SRR448498.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNSH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARNSH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsPrimary.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARNSH_NormalVsRecurrent.png	4			
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARNSH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARNSH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARNSH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARNSH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARNSH-14A-01D	DNA	EFO	SRS270590	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G05	SRX131590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARNSH-14A-01D GS00869-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37420-FS3_L01.bam	SRR448514	@dbgap@:reads/SRP011999/SRS270590/SRX131590/SRR448514/SRR448514.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPCA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-09A-01D	DNA	EFO	SRS300985	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F09	SRX170591	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-09A-01D GS01042-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48810-FS3_L01.bam	SRR525499	@dbgap@:reads/SRP011999/SRS300985/SRX170591/SRR525499/SRR525499.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPCA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPCA_NormalVsPrimary.png	4			
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPCA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPCA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPCA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPCA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPCA-10A-01D	DNA	EFO	SRS300986	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G09	SRX170590	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPCA-10A-01D GS01042-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48811-FS3_L01.bam	SRR525506	@dbgap@:reads/SRP011999/SRS300986/SRX170590/SRR525506/SRR525506.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-04A-01D	DNA	EFO	SRS160249	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B06	SRX149213	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-04A-01D GS00726-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32973-FS3_L01.bam	SRR500191	@dbgap@:reads/SRP011999/SRS160249/SRX149213/SRR500191/SRR500191.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-09A-01D	DNA	EFO	SRS287467	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H05	SRX149212	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-09A-01D GS00726-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32972-FS3_L01.bam	SRR500199	@dbgap@:reads/SRP011999/SRS287467/SRX149212/SRR500199/SRR500199.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_A06	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00726-CLS_A06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPNM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsPrimary.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPNM_NormalVsRecurrent.png	4			
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPNM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPNM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPNM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPNM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPNM-10A-01D	DNA	EFO	SRS160250	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_G03	SRX149211	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPNM-10A-01D GS00943-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41373-FS3_L01.bam	SRR500207	@dbgap@:reads/SRP011999/SRS160250/SRX149211/SRR500207/SRR500207.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-09A-01D	DNA	EFO	SRS287468	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A04	SRX202699	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-09A-01D GS00943-CLS_A04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41629-FS3_L01.bam	SRR610950	@dbgap@:reads/SRP011999/SRS287468/SRX202699/SRR610950/SRR610950.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPRW_NormalVsPrimary.png	4			
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPRW-10A-01D	DNA	EFO	SRS160253	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01070-CLS_F12	SRX202698	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPRW-10A-01D GS01070-CLS_F12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS52047-FS3_L01.bam	SRR610957	@dbgap@:reads/SRP011999/SRS160253/SRX202698/SRR610957/SRR610957.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPZJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_A02	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00943-CLS_A02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPZJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-03A-01D	DNA	EFO	SRS270591	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F01	SRX149232	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-03A-01D GS00726-CLS_F01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41745-FS3_L01.bam	SRR500279	@dbgap@:reads/SRP011999/SRS270591/SRX149232/SRR500279/SRR500279.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPZJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-04A-01D	DNA	EFO	SRS270592	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_H01	SRX149233	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-04A-01D GS00726-CLS_H01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS33622-FS3_L01.bam	SRR500271	@dbgap@:reads/SRP011999/SRS270592/SRX149233/SRR500271/SRR500271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPZJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARPZJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsPrimary.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARPZJ_NormalVsRecurrent.png	4			
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARPZJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARPZJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARPZJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARPZJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARPZJ-10A-01D	DNA	EFO	SRS270593	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_B02	SRX149231	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARPZJ-10A-01D GS00943-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41743-FS3_L01.bam	SRR500286	@dbgap@:reads/SRP011999/SRS270593/SRX149231/SRR500286/SRR500286.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRAF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-03A-01D	DNA	EFO	SRS489916	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B12	SRX363188	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-03A-01D GS01997-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64771-FS3_L01.bam	SRR1008627	@dbgap@:reads/SRP011999/SRS489916/SRX363188/SRR1008627/SRR1008627.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRAF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRAF_NormalVsPrimary.png	4			
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRAF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRAF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARRAF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRAF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRAF-10A-01D	DNA	EFO	SRS489915	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C12	SRX363187	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRAF-10A-01D GS01997-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L03.bam	SRR1008634	@dbgap@:reads/SRP011999/SRS489915/SRX363187/SRR1008634/SRR1008634.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRPK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-09B	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-09B-01D	DNA	EFO	SRS501675	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_C11	SRX376762	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-09B-01D GS02031-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67493-FS3_L01.bam	SRR1028813	@dbgap@:reads/SRP011999/SRS501675/SRX376762/SRR1028813/SRR1028813.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRPK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRPK_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsPrimary.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-14B	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-14B-01D	DNA	EFO	SRS502953	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_D11	SRX378158	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-14B-01D GS02031-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS67494-FS3_L01.bam	SRR1030580	@dbgap@:reads/SRP011999/SRS502953/SRX378158/SRR1030580/SRR1030580.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARRPK_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARRPK_NormalVsXenograft1C.png	4			
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARRPK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARRPK-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARRPK-60.1C-01D	DNA	EFO	SRS510639	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_D10	SRX386615	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARRPK-60.1C-01D GS02039-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69320-FS3_L01.bam	SRR1042345	@dbgap@:reads/SRP011999/SRS510639/SRX386615/SRR1042345/SRR1042345.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARRPK_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARRPK_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSGC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-03A-01D	DNA	EFO	SRS300987	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F10	SRX176225	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-03A-01D GS01042-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48805-FS3_L01.bam	SRR538290	@dbgap@:reads/SRP011999/SRS300987/SRX176225/SRR538290/SRR538290.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSGC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSGC_NormalVsPrimary.png	4			
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSGC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSGC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARSGC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSGC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSGC-10A-01D	DNA	EFO	SRS300988	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G10	SRX176224	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSGC-10A-01D GS01042-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48792-FS3_L01.bam	SRR538297	@dbgap@:reads/SRP011999/SRS300988/SRX176224/SRR538297/SRR538297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARSLL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARSLL.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARSLL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARSLL.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARSLL-09A-01D.indel.vcf	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARSLL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARSLL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-09A-01D	DNA	EFO	SRS1761275	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-09A-01D A59095 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59095	SRX2241861	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARSLL-09A-01D A59095 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59095_3_lanes_dupsFlagged.bam	SRR4419477	@dbgap@:reads/SRP011999/SRS1761275/SRX2241861/SRR4419477/SRR4419477.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARSLL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARSLL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARSLL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSLL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSLL-10A-01D	DNA	EFO	SRS1761343	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARSLL-10A-01D A59205 library	PAIRED	GENOMIC	WGS	RANDOM	447	A59205	SRX2241931	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARSLL-10A-01D A59205 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59205_2_lanes_dupsFlagged.bam	SRR4419466	@dbgap@:reads/SRP011999/SRS1761343/SRX2241931/SRR4419466/SRR4419466.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARSLL-09A-01D_TARGET-10-PARSLL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARSLL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSZH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-04A-01D	DNA	EFO	SRS270594	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C10	SRX130524	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-04A-01D GS00869-CLS_C10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38049-FS3_L01.bam	SRR446773	@dbgap@:reads/SRP011999/SRS270594/SRX130524/SRR446773/SRR446773.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSZH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-09A-01D	DNA	EFO	SRS270595	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B02	SRX130525	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-09A-01D GS00869-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37417-FS3_L01.bam	SRR446765	@dbgap@:reads/SRP011999/SRS270595/SRX130525/SRR446765/SRR446765.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSZH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARSZH_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsPrimary.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARSZH_NormalVsRecurrent.png	4			
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARSZH_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARSZH_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARSZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARSZH-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARSZH-14A-01D	DNA	EFO	SRS270596	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D10	SRX130523	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARSZH-14A-01D GS00869-CLS_D10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37418-FS3_L01.bam	SRR446781	@dbgap@:reads/SRP011999/SRS270596/SRX130523/SRR446781/SRR446781.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTJL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-04A-01D	DNA	EFO	SRS270597	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_G02	SRX130467	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-04A-01D GS00869-CLS_G02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37984-FS3_L01.bam	SRR446688	@dbgap@:reads/SRP011999/SRS270597/SRX130467/SRR446688/SRR446688.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTJL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-09A-01D	DNA	EFO	SRS270598	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E10	SRX130468	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-09A-01D GS00869-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37985-FS3_L01.bam	SRR446680	@dbgap@:reads/SRP011999/SRS270598/SRX130468/SRR446680/SRR446680.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTJL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTJL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsPrimary.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTJL_NormalVsRecurrent.png	4			
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTJL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTJL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTJL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTJL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTJL-14A-01D	DNA	EFO	SRS270599	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H05	SRX130466	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTJL-14A-01D GS00869-CLS_H05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37751-FS3_L01.bam	SRR446696	@dbgap@:reads/SRP011999/SRS270599/SRX130466/SRR446696/SRR446696.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTKL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-04A-01D	DNA	EFO	SRS270600	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B08	SRX131517	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-04A-01D GS00868-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38050-FS3_L01.bam	SRR448200	@dbgap@:reads/SRP011999/SRS270600/SRX131517/SRR448200/SRR448200.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTKL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-09A-01D	DNA	EFO	SRS270601	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C11	SRX131516	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-09A-01D GS00868-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38051-FS3_L01.bam	SRR448208	@dbgap@:reads/SRP011999/SRS270601/SRX131516/SRR448208/SRR448208.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTKL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTKL_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsPrimary.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTKL_NormalVsRecurrent.png	4			
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTKL_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTKL_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTKL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTKL-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTKL-14A-01D	DNA	EFO	SRS270602	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H03	SRX131515	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTKL-14A-01D GS00868-CLS_H03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38052-FS3_L01.bam	SRR448216	@dbgap@:reads/SRP011999/SRS270602/SRX131515/SRR448216/SRR448216.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-04A-01D	DNA	EFO	SRS270604	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G05	SRX147851	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-04A-01D GS00726-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32808-FS3_L01.bam	SRR496704	@dbgap@:reads/SRP011999/SRS270604/SRX147851/SRR496704/SRR496704.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_E03	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00943-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-09A-01D	DNA	EFO	SRS287469	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E05	SRX147850	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-09A-01D GS00726-CLS_E05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41581-FS3_L01.bam	SRR496712	@dbgap@:reads/SRP011999/SRS287469/SRX147850/SRR496712/SRR496712.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_F03	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00943-CLS_F03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTRW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsPrimary.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTRW_NormalVsRecurrent.png	4			
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTRW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTRW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTRW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTRW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTRW-10A-01D	DNA	EFO	SRS270605	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F05	SRX147849	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTRW-10A-01D GS00726-CLS_F05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41374-FS3_L01.bam	SRR496719	@dbgap@:reads/SRP011999/SRS270605/SRX147849/SRR496719/SRR496719.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTYT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-09A-01D	DNA	EFO	SRS300989	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_A12	SRX170995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-09A-01D GS01043-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47625-FS3_L02.bam	SRR527395	@dbgap@:reads/SRP011999/SRS300989/SRX170995/SRR527395/SRR527395.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARTYT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARTYT_NormalVsPrimary.png	4			
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARTYT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARTYT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARTYT-10A-01D	DNA	EFO	SRS300990	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_B12	SRX170994	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARTYT-10A-01D GS01043-CLS_B12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47626-FS3_L01.bam	SRR527401	@dbgap@:reads/SRP011999/SRS300990/SRX170994/SRR527401/SRR527401.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUAT-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARUAT.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUAT-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARUAT.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUAT-09A-01D.indel.vcf	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUAT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUAT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-09A-01D	DNA	EFO	SRS1761328	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-09A-01D A59096 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59096	SRX2241914	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUAT-09A-01D A59096 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59096_3_lanes_dupsFlagged.bam	SRR4419499	@dbgap@:reads/SRP011999/SRS1761328/SRX2241914/SRR4419499/SRR4419499.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUAT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUAT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUAT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUAT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUAT-10A-01D	DNA	EFO	SRS1761286	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUAT-10A-01D A59206 library	PAIRED	GENOMIC	WGS	RANDOM	408	A59206	SRX2241872	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUAT-10A-01D A59206 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59206_2_lanes_dupsFlagged.bam	SRR4419524	@dbgap@:reads/SRP011999/SRS1761286/SRX2241872/SRR4419524/SRR4419524.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUAT-09A-01D_TARGET-10-PARUAT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUAT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUBK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-03A-01D	DNA	EFO	SRS300991	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C12	SRX176550	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-03A-01D GS01043-CLS_C12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48269-FS3_L03.bam	SRR538842	@dbgap@:reads/SRP011999/SRS300991/SRX176550/SRR538842/SRR538842.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUBK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUBK_NormalVsPrimary.png	4			
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUBK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUBK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUBK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUBK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUBK-10A-01D	DNA	EFO	SRS300992	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D12	SRX176549	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUBK-10A-01D GS01043-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47624-FS3_L01.bam	SRR538849	@dbgap@:reads/SRP011999/SRS300992/SRX176549/SRR538849/SRR538849.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUFL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARUFL.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUFL-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARUFL.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUFL-09A-01D.indel.vcf	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUFL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUFL-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-09A-01D	DNA	EFO	SRS1761274	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-09A-01D A59097 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59097	SRX2241860	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUFL-09A-01D A59097 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59097_3_lanes_dupsFlagged.bam	SRR4419546	@dbgap@:reads/SRP011999/SRS1761274/SRX2241860/SRR4419546/SRR4419546.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUFL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUFL-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUFL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUFL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUFL-10A-01D	DNA	EFO	SRS1761304	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUFL-10A-01D A59207 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59207	SRX2241890	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUFL-10A-01D A59207 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59207_2_lanes_dupsFlagged.bam	SRR4419478	@dbgap@:reads/SRP011999/SRS1761304/SRX2241890/SRR4419478/SRR4419478.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUFL-09A-01D_TARGET-10-PARUFL-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUFL.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-09A-01D	DNA	EFO	SRS300993	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_E09	SRX170999	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-09A-01D GS01044-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49013-FS3_L03.bam	SRR527423	@dbgap@:reads/SRP011999/SRS300993/SRX170999/SRR527423/SRR527423.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUGP_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUGP_NormalVsPrimary.png	4			
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUGP_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUGP_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUGP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUGP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUGP-10A-01D	DNA	EFO	SRS300994	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS01044-CLS_F09	SRX170998	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUGP-10A-01D GS01044-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49012-FS3_L01.bam	SRR527430	@dbgap@:reads/SRP011999/SRS300994/SRX170998/SRR527430/SRR527430.sra	2	GRCh37		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUIW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-03A-01D	DNA	EFO	SRS300995	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_G05	SRX205063	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-03A-01D GS01043-CLS_G05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS49163-FS3_L01.bam	SRR618244	@dbgap@:reads/SRP011999/SRS300995/SRX205063/SRR618244/SRR618244.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARUIW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARUIW_NormalVsPrimary.png	4			
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARUIW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARUIW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARUIW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUIW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUIW-10A-01D	DNA	EFO	SRS300996	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS01099-CLS_F07	SRX205062	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARUIW-10A-01D GS01099-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS54820-FS3_L01.bam	SRR618251	@dbgap@:reads/SRP011999/SRS300996/SRX205062/SRR618251/SRR618251.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUNW-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARUNW.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARUNW-09A-01D.indel.vcf	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUNW-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUNW-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-09A-01D	DNA	EFO	SRS1761297	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-09A-01D A59098 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59098	SRX2241883	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARUNW-09A-01D A59098 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59098_3_lanes_dupsFlagged.bam	SRR4419505	@dbgap@:reads/SRP011999/SRS1761297/SRX2241883/SRR4419505/SRR4419505.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARUNW-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARUNW-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARUNW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARUNW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARUNW-10A-01D	DNA	EFO	SRS1761295	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARUNW-10A-01D A59208 library	PAIRED	GENOMIC	WGS	RANDOM	413	A59208	SRX2241881	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARUNW-10A-01D A59208 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59208_2_lanes_dupsFlagged.bam	SRR4419523	@dbgap@:reads/SRP011999/SRS1761295/SRX2241881/SRR4419523/SRR4419523.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARUNW-09A-01D_TARGET-10-PARUNW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARUNW.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARVBS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-03A-01D	DNA	EFO	SRS489854	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D12	SRX363126	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-03A-01D GS01997-CLS_D12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64773-FS3_L01.bam	SRR1008197	@dbgap@:reads/SRP011999/SRS489854/SRX363126/SRR1008197/SRR1008197.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARVBS_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVBS_NormalVsPrimary.png	4			
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVBS_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVBS_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARVBS	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVBS-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVBS-10A-01D	DNA	EFO	SRS489852	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E12	SRX363125	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVBS-10A-01D GS01997-CLS_E12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64772-FS3_L01.bam	SRR1008204	@dbgap@:reads/SRP011999/SRS489852/SRX363125/SRR1008204/SRR1008204.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARVWD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-09A-01D	DNA	EFO	SRS300997	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_C05	SRX176575	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-09A-01D GS01043-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48213-FS3_L01.bam	SRR539020	@dbgap@:reads/SRP011999/SRS300997/SRX176575/SRR539020/SRR539020.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARVWD_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARVWD_NormalVsPrimary.png	4			
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARVWD_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARVWD_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARVWD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARVWD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARVWD-10A-01D	DNA	EFO	SRS300998	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS01043-CLS_D05	SRX176574	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARVWD-10A-01D GS01043-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48215-FS3_L01.bam	SRR539027	@dbgap@:reads/SRP011999/SRS300998/SRX176574/SRR539027/SRR539027.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARWRJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARWRJ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARWRJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARWRJ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARWRJ-09A-01D.indel.vcf	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARWRJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARWRJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-09A-01D	DNA	EFO	SRS1761257	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-09A-01D A59099 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59099	SRX2241843	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARWRJ-09A-01D A59099 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59099_3_lanes_dupsFlagged.bam	SRR4419539	@dbgap@:reads/SRP011999/SRS1761257/SRX2241843/SRR4419539/SRR4419539.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARWRJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARWRJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWRJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWRJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWRJ-10A-01D	DNA	EFO	SRS1761337	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWRJ-10A-01D A59209 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59209	SRX2241925	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARWRJ-10A-01D A59209 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59209_2_lanes_dupsFlagged.bam	SRR4419540	@dbgap@:reads/SRP011999/SRS1761337/SRX2241925/SRR4419540/SRR4419540.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARWRJ-09A-01D_TARGET-10-PARWRJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWRJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARWVN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-03A-01D	DNA	EFO	SRS270606	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_C04	SRX122359	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-03A-01D GS00869-CLS_C04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39336-FS3_L01.bam	SRR414153	@dbgap@:reads/SRP011999/SRS270606/SRX122359/SRR414153/SRR414153.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARWVN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-04A-01D	DNA	EFO	SRS270607	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_E03	SRX122360	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-04A-01D GS00869-CLS_E03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39335-FS3_L01.bam	SRR414145	@dbgap@:reads/SRP011999/SRS270607/SRX122360/SRR414145/SRR414145.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARWVN_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARWVN_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsPrimary.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARWVN_NormalVsRecurrent.png	4			
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARWVN_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARWVN_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARWVN	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWVN-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWVN-10A-01D	DNA	EFO	SRS270608	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B10	SRX122358	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARWVN-10A-01D GS00869-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39337-FS3_L01.bam	SRR414161	@dbgap@:reads/SRP011999/SRS270608/SRX122358/SRR414161/SRR414161.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARWXF-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARWXF.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARWXF-03A-01D.indel.vcf	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARWXF-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARWXF-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-03A-01D	DNA	EFO	SRS1761344	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-03A-01D A59114 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59114	SRX2241932	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARWXF-03A-01D A59114 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59114_3_lanes_dupsFlagged.bam	SRR4419530	@dbgap@:reads/SRP011999/SRS1761344/SRX2241932/SRR4419530/SRR4419530.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARWXF-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARWXF-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARWXF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARWXF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARWXF-10A-01D	DNA	EFO	SRS1761285	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARWXF-10A-01D A59224 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59224	SRX2241871	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PARWXF-10A-01D A59224 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59224_2_lanes_dupsFlagged.bam	SRR4419511	@dbgap@:reads/SRP011999/SRS1761285/SRX2241871/SRR4419511/SRR4419511.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARWXF-03A-01D_TARGET-10-PARWXF-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARWXF.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARXCD-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARXCD.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARXCD-09A-01D.indel.vcf	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARXCD-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARXCD-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-09A-01D	DNA	EFO	SRS1761320	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-09A-01D A59100 library	PAIRED	GENOMIC	WGS	RANDOM	429	A59100	SRX2241906	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PARXCD-09A-01D A59100 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59100_3_lanes_dupsFlagged.bam	SRR4419545	@dbgap@:reads/SRP011999/SRS1761320/SRX2241906/SRR4419545/SRR4419545.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARXCD-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARXCD-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARXCD	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXCD-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXCD-10A-01D	DNA	EFO	SRS1761291	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARXCD-10A-01D A59210 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59210	SRX2241877	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PARXCD-10A-01D A59210 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59210_2_lanes_dupsFlagged.bam	SRR4419528	@dbgap@:reads/SRP011999/SRS1761291/SRX2241877/SRR4419528/SRR4419528.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARXCD-09A-01D_TARGET-10-PARXCD-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARXCD.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARXMC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-04A-01D	DNA	EFO	SRS270609	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E11	SRX131662	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-04A-01D GS00868-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37752-FS3_L01.bam	SRR448898	@dbgap@:reads/SRP011999/SRS270609/SRX131662/SRR448898/SRR448898.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARXMC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-09A-01D	DNA	EFO	SRS270610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G11	SRX131661	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-09A-01D GS00868-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37753-FS3_L01.bam	SRR448906	@dbgap@:reads/SRP011999/SRS270610/SRX131661/SRR448906/SRR448906.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARXMC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PARXMC_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsPrimary.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PARXMC_NormalVsRecurrent.png	4			
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PARXMC_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PARXMC_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PARXMC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARXMC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARXMC-14A-01D	DNA	EFO	SRS270611	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B02	SRX131660	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PARXMC-14A-01D GS00868-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39410-FS3_L01.bam	SRR448914	@dbgap@:reads/SRP011999/SRS270611/SRX131660/SRR448914/SRR448914.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARYAJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARYAJ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARYAJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARYAJ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARYAJ-09A-01D.indel.vcf	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARYAJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARYAJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-09A-01D	DNA	EFO	SRS1761282	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-09A-01D A59085 library	PAIRED	GENOMIC	WGS	RANDOM	440	A59085	SRX2241868	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARYAJ-09A-01D A59085 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59085_3_lanes_dupsFlagged.bam	SRR4419460	@dbgap@:reads/SRP011999/SRS1761282/SRX2241868/SRR4419460/SRR4419460.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARYAJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARYAJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARYAJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARYAJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARYAJ-10A-01D	DNA	EFO	SRS1761324	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARYAJ-10A-01D A59195 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59195	SRX2241910	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARYAJ-10A-01D A59195 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59195_2_lanes_dupsFlagged.bam	SRR4419527	@dbgap@:reads/SRP011999/SRS1761324/SRX2241910/SRR4419527/SRR4419527.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARYAJ-09A-01D_TARGET-10-PARYAJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARYAJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARZYX-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PARZYX.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PARZYX-09A-01D.indel.vcf	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARZYX-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARZYX-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-09A-01D	DNA	EFO	SRS1761278	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-09A-01D A59086 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59086	SRX2241864	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PARZYX-09A-01D A59086 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59086_3_lanes_dupsFlagged.bam	SRR4419463	@dbgap@:reads/SRP011999/SRS1761278/SRX2241864/SRR4419463/SRR4419463.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.quality_tagged.vcf	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PARZYX-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PARZYX-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PARZYX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PARZYX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PARZYX-10A-01D	DNA	EFO	SRS1761307	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PARZYX-10A-01D A59196 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59196	SRX2241893	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PARZYX-10A-01D A59196 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59196_2_lanes_dupsFlagged.bam	SRR4419457	@dbgap@:reads/SRP011999/SRS1761307/SRX2241893/SRR4419457/SRR4419457.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PARZYX-09A-01D_TARGET-10-PARZYX-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PARZYX.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASCIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-03A-01D	DNA	EFO	SRS300999	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_H10	SRX170580	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-03A-01D GS01042-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48791-FS3_L01.bam	SRR525767	@dbgap@:reads/SRP011999/SRS300999/SRX170580/SRR525767/SRR525767.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASCIU_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASCIU_NormalVsPrimary.png	4			
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASCIU_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASCIU_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASCIU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASCIU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASCIU-10A-01D	DNA	EFO	SRS301000	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_A11	SRX170579	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASCIU-10A-01D GS01042-CLS_A11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48190-FS3_L01.bam	SRR525775	@dbgap@:reads/SRP011999/SRS301000/SRX170579/SRR525775/SRR525775.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASDYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-09A-01D	DNA	EFO	SRS301001	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B10	SRX362996	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-09A-01D GS01042-CLS_B10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48189-FS3_L02.bam	SRR1007289	@dbgap@:reads/SRP011999/SRS301001/SRX362996/SRR1007289/SRR1007289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASDYK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASDYK_NormalVsPrimary.png	4			
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASDYK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASDYK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASDYK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYK-10A-01D	DNA	EFO	SRS301002	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 library	PAIRED	GENOMIC	WGS	RANDOM		GS01962-CLS_B02	SRX362995	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASDYK-10A-01D GS01962-CLS_B02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS59964-FS3_L01.bam	SRR1007295	@dbgap@:reads/SRP011999/SRS301002/SRX362995/SRR1007295/SRR1007295.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASDYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYM-09A-01D	DNA	EFO	SRS1868071	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYM-09A-01D A59087 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59087	SRX2430618	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASDYM-09A-01D A59087 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59087_3_lanes_dupsFlagged.bam	SRR5115249	@dbgap@:reads/SRP011999/SRS1868071/SRX2430618/SRR5115249/SRR5115249.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASDYM-09A-01D.fusion.vcf	3						
TARGET-10-PASDYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYM-09A-01D	DNA	EFO	SRS1868071	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYM-09A-01D A59087 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59087	SRX2430618	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASDYM-09A-01D A59087 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59087_3_lanes_dupsFlagged.bam	SRR5115249	@dbgap@:reads/SRP011999/SRS1868071/SRX2430618/SRR5115249/SRR5115249.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASDYM-09A-01D.indel.vcf	3						
TARGET-10-PASDYM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASDYM-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASDYM-09A-01D	DNA	EFO	SRS1868071	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASDYM-09A-01D A59087 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59087	SRX2430618	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASDYM-09A-01D A59087 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59087_3_lanes_dupsFlagged.bam	SRR5115249	@dbgap@:reads/SRP011999/SRS1868071/SRX2430618/SRR5115249/SRR5115249.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASDYM-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASDYM-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASEVJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-09A-01D	DNA	EFO	SRS270612	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A08	SRX122209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-09A-01D GS00868-CLS_A08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39327-FS3_L01.bam	SRR413815	@dbgap@:reads/SRP011999/SRS270612/SRX122209/SRR413815/SRR413815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASEVJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASEVJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsPrimary.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-10A-01D	DNA	EFO	SRS270613	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F02	SRX122208	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-10A-01D GS00868-CLS_F02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39334-FS3_L01.bam	SRR413823	@dbgap@:reads/SRP011999/SRS270613/SRX122208/SRR413823/SRR413823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASEVJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASEVJ_NormalVsRecurrent.png	4			
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASEVJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASEVJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASEVJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASEVJ-40A	organism part	EFO	Peripheral Blood	NCIt	"Recurrent Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASEVJ-40A-01D	DNA	EFO	SRS270614	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_E01	SRX122210	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASEVJ-40A-01D GS00868-CLS_E01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39332-FS3_L01.bam	SRR413807	@dbgap@:reads/SRP011999/SRS270614/SRX122210/SRR413807/SRR413807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-09A-01D	DNA	EFO	SRS513059	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_H11	SRX389384	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-09A-01D GS02045-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70130-FS3_L01.bam	SRR1045952	@dbgap@:reads/SRP011999/SRS513059/SRX389384/SRR1045952/SRR1045952.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsPrimary.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-14A-01D	DNA	EFO	SRS513076	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_A12	SRX389394	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-14A-01D GS02045-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70015-FS3_L01.bam	SRR1045991	@dbgap@:reads/SRP011999/SRS513076/SRX389394/SRR1045991/SRR1045991.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft1C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.1C-01D	DNA	EFO	SRS512967	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_D09	SRX389293	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.1C-01D GS02045-CLS_D09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71074-FS3_L01.bam	SRR1045845	@dbgap@:reads/SRP011999/SRS512967/SRX389293/SRR1045845/SRR1045845.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft3C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.3C-01D	DNA	EFO	SRS512966	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_E09	SRX389292	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.3C-01D GS02045-CLS_E09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS71073-FS3_L01.bam	SRR1045562	@dbgap@:reads/SRP011999/SRS512966/SRX389292/SRR1045562/SRR1045562.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft5C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft5C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.5C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.5C-01D	DNA	EFO	SRS512652	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_F09	SRX388791	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.5C-01D GS02045-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70128-FS3_L01.bam	SRR1044996	@dbgap@:reads/SRP011999/SRS512652/SRX388791/SRR1044996/SRR1044996.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft5C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft5C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 library	PAIRED	GENOMIC	WGS	RANDOM		GS02045-CLS_G09	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02045-CLS_G09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFGA_NormalVsXenograft11C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFGA_NormalVsXenograft11C.png	4			
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFGA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFGA-60.11C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFGA-60.11C-01D	DNA	EFO	SRS557647	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02072-CLS_F08	SRX470504	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFGA-60.11C-01D GS02072-CLS_F08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS72303-FS3_L01.bam	SRR1168939	@dbgap@:reads/SRP011999/SRS557647/SRX470504/SRR1168939/SRR1168939.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFGA_NormalVsXenograft11C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFGA_NormalVsXenograft11C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFTL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-09A-01D	DNA	EFO	SRS489860	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_B11	SRX363132	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-09A-01D GS01997-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64813-FS3_L03.bam	SRR1008236	@dbgap@:reads/SRP011999/SRS489860/SRX363132/SRR1008236/SRR1008236.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFTL_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFTL_NormalVsPrimary.png	4			
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFTL_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFTL_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFTL	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFTL-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFTL-10A-01D	DNA	EFO	SRS489859	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_C11	SRX363131	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFTL-10A-01D GS01997-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62655-FS3_L01.bam	SRR1008243	@dbgap@:reads/SRP011999/SRS489859/SRX363131/SRR1008243/SRR1008243.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-03A-01D	DNA	EFO	SRS160254	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_B05	SRX148185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-03A-01D GS00726-CLS_B05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32810-FS3_L01.bam	SRR497069	@dbgap@:reads/SRP011999/SRS160254/SRX148185/SRR497069/SRR497069.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFXA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D03	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00943-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFXA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-04A-01D	DNA	EFO	SRS160255	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_D05	SRX148184	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-04A-01D GS00726-CLS_D05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41582-FS3_L01.bam	SRR497077	@dbgap@:reads/SRP011999/SRS160255/SRX148184/SRR497077/SRR497077.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFXA_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASFXA_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsPrimary.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASFXA_NormalVsRecurrent.png	4			
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASFXA_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASFXA_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASFXA	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASFXA-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASFXA-10A-01D	DNA	EFO	SRS160256	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_C05	SRX148183	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASFXA-10A-01D GS00726-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32809-FS3_L01.bam	SRR497084	@dbgap@:reads/SRP011999/SRS160256/SRX148183/SRR497084/SRR497084.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASHUI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-04A-01D	DNA	EFO	SRS270615	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C02	SRX155901	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-04A-01D GS00868-CLS_C02 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39197-FS3_L01.bam	SRR515606	@dbgap@:reads/SRP011999/SRS270615/SRX155901/SRR515606/SRR515606.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASHUI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-09A-01D	DNA	EFO	SRS270616	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G04	SRX155902	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-09A-01D GS00868-CLS_G04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39635-FS3_L01.bam	SRR515598	@dbgap@:reads/SRP011999/SRS270616/SRX155902/SRR515598/SRR515598.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASHUI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASHUI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsPrimary.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASHUI_NormalVsRecurrent.png	4			
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASHUI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASHUI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASHUI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASHUI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASHUI-10A-01D	DNA	EFO	SRS270617	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 library	PAIRED	GENOMIC	WGS	RANDOM		GS01034-CLS_C01	SRX155900	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASHUI-10A-01D GS01034-CLS_C01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47370-FS3_L03.bam	SRR515614	@dbgap@:reads/SRP011999/SRS270617/SRX155900/SRR515614/SRR515614.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASIGB-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASIGB.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASIGB-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASIGB.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASIGB-03A-01D.indel.vcf	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASIGB-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASIGB-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-03A-01D	DNA	EFO	SRS1761312	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-03A-01D A59101 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59101	SRX2241898	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIGB-03A-01D A59101 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59101_3_lanes_dupsFlagged.bam	SRR4419541	@dbgap@:reads/SRP011999/SRS1761312/SRX2241898/SRR4419541/SRR4419541.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASIGB-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASIGB-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIGB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIGB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIGB-10A-01D	DNA	EFO	SRS1761322	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIGB-10A-01D A59211 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59211	SRX2241908	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIGB-10A-01D A59211 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59211_2_lanes_dupsFlagged.bam	SRR4419484	@dbgap@:reads/SRP011999/SRS1761322/SRX2241908/SRR4419484/SRR4419484.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASIGB-03A-01D_TARGET-10-PASIGB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIGB.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASIIK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-03A-01D	DNA	EFO	SRS489862	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_D11	SRX363134	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-03A-01D GS01997-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62653-FS3_L01.bam	SRR1008250	@dbgap@:reads/SRP011999/SRS489862/SRX363134/SRR1008250/SRR1008250.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASIIK_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASIIK_NormalVsPrimary.png	4			
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASIIK_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASIIK_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASIIK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIIK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIIK-10A-01D	DNA	EFO	SRS489861	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_E11	SRX363133	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASIIK-10A-01D GS01997-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS62654-FS3_L01.bam	SRR1008257	@dbgap@:reads/SRP011999/SRS489861/SRX363133/SRR1008257/SRR1008257.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASILP-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASILP.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASILP-09A-01D.indel.vcf	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASILP-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASILP-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-09A-01D	DNA	EFO	SRS1761268	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-09A-01D A59124 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59124	SRX2241854	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-13	TARGET-10-PASILP-09A-01D A59124 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59124_3_lanes_dupsFlagged.bam	SRR4419538	@dbgap@:reads/SRP011999/SRS1761268/SRX2241854/SRR4419538/SRR4419538.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASILP-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASILP-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASILP	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASILP-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASILP-10A-01D	DNA	EFO	SRS1761330	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASILP-10A-01D A59234 library	PAIRED	GENOMIC	WGS	RANDOM	446	A59234	SRX2241916	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-15	TARGET-10-PASILP-10A-01D A59234 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59234_2_lanes_dupsFlagged.bam	SRR4419508	@dbgap@:reads/SRP011999/SRS1761330/SRX2241916/SRR4419508/SRR4419508.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASILP-09A-01D_TARGET-10-PASILP-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASILP.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASIZE-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASIZE.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASIZE-09A-01D.indel.vcf	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASIZE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASIZE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-09A-01D	DNA	EFO	SRS1761261	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-09A-01D A59102 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59102	SRX2241847	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASIZE-09A-01D A59102 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59102_3_lanes_dupsFlagged.bam	SRR4419459	@dbgap@:reads/SRP011999/SRS1761261/SRX2241847/SRR4419459/SRR4419459.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASIZE-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASIZE-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASIZE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASIZE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASIZE-10A-01D	DNA	EFO	SRS1761288	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASIZE-10A-01D A59212 library	PAIRED	GENOMIC	WGS	RANDOM	448	A59212	SRX2241874	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASIZE-10A-01D A59212 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59212_2_lanes_dupsFlagged.bam	SRR4419495	@dbgap@:reads/SRP011999/SRS1761288/SRX2241874/SRR4419495/SRR4419495.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASIZE-09A-01D_TARGET-10-PASIZE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASIZE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASKHT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-03A-01D	DNA	EFO	SRS270618	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B07	SRX122362	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-03A-01D GS00868-CLS_B07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39330-FS3_L01.bam	SRR414177	@dbgap@:reads/SRP011999/SRS270618/SRX122362/SRR414177/SRR414177.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASKHT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-04A-01D	DNA	EFO	SRS270619	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_G03	SRX122363	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-04A-01D GS00868-CLS_G03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39329-FS3_L01.bam	SRR414169	@dbgap@:reads/SRP011999/SRS270619/SRX122363/SRR414169/SRR414169.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASKHT_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASKHT_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsPrimary.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASKHT_NormalVsRecurrent.png	4			
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASKHT_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASKHT_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASKHT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASKHT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASKHT-10A-01D	DNA	EFO	SRS270620	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_B06	SRX122361	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASKHT-10A-01D GS00868-CLS_B06 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39331-FS3_L01.bam	SRR414185	@dbgap@:reads/SRP011999/SRS270620/SRX122361/SRR414185/SRR414185.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLCJ-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASLCJ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLCJ-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASLCJ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLCJ-03A-01D.indel.vcf	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASLCJ-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASLCJ-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-03A-01D	DNA	EFO	SRS1761265	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-03A-01D A59103 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59103	SRX2241851	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLCJ-03A-01D A59103 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59103_3_lanes_dupsFlagged.bam	SRR4419458	@dbgap@:reads/SRP011999/SRS1761265/SRX2241851/SRR4419458/SRR4419458.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASLCJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASLCJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLCJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLCJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLCJ-10A-01D	DNA	EFO	SRS1761315	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLCJ-10A-01D A59213 library	PAIRED	GENOMIC	WGS	RANDOM	449	A59213	SRX2241901	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLCJ-10A-01D A59213 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59213_2_lanes_dupsFlagged.bam	SRR4419542	@dbgap@:reads/SRP011999/SRS1761315/SRX2241901/SRR4419542/SRR4419542.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASLCJ-03A-01D_TARGET-10-PASLCJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLCJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLMB-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASLMB.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLMB-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASLMB.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASLMB-03A-01D.indel.vcf	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASLMB-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASLMB-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-03A-01D	DNA	EFO	SRS1761339	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-03A-01D A59104 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59104	SRX2241927	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASLMB-03A-01D A59104 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59104_3_lanes_dupsFlagged.bam	SRR4419462	@dbgap@:reads/SRP011999/SRS1761339/SRX2241927/SRR4419462/SRR4419462.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASLMB-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASLMB-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASLMB	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLMB-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLMB-10A-01D	DNA	EFO	SRS1761262	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASLMB-10A-01D A59214 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59214	SRX2241848	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASLMB-10A-01D A59214 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59214_2_lanes_dupsFlagged.bam	SRR4419506	@dbgap@:reads/SRP011999/SRS1761262/SRX2241848/SRR4419506/SRR4419506.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASLMB-03A-01D_TARGET-10-PASLMB-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASLMB.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASLZM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-03A-01D	DNA	EFO	SRS160260	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_E07	SRX148452	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-03A-01D GS00726-CLS_E07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32179-FS3_L01.bam	SRR497807	@dbgap@:reads/SRP011999/SRS160260/SRX148452/SRR497807/SRR497807.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASLZM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00943-CLS_D04	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00943-CLS_D04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASLZM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-04A-01D	DNA	EFO	SRS160261	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_G07	SRX148451	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-04A-01D GS00726-CLS_G07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS41713-FS3_L01.bam	SRR497815	@dbgap@:reads/SRP011999/SRS160261/SRX148451/SRR497815/SRR497815.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASLZM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASLZM_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsPrimary.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASLZM_NormalVsRecurrent.png	4			
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASLZM_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASLZM_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASLZM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASLZM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASLZM-10A-01D	DNA	EFO	SRS160262	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 library	PAIRED	GENOMIC	WGS	RANDOM		GS00726-CLS_F07	SRX148450	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASLZM-10A-01D GS00726-CLS_F07 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS32152-FS3_L01.bam	SRR497823	@dbgap@:reads/SRP011999/SRS160262/SRX148450/SRR497823/SRR497823.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASMGZ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASMGZ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASMGZ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASMGZ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASMGZ-09A-01D.indel.vcf	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASMGZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASMGZ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-09A-01D	DNA	EFO	SRS1761342	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-09A-01D A59115 library	PAIRED	GENOMIC	WGS	RANDOM	428	A59115	SRX2241930	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASMGZ-09A-01D A59115 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59115_3_lanes_dupsFlagged.bam	SRR4419481	@dbgap@:reads/SRP011999/SRS1761342/SRX2241930/SRR4419481/SRR4419481.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASMGZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASMGZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASMGZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMGZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMGZ-10A-01D	DNA	EFO	SRS1761325	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASMGZ-10A-01D A59225 library	PAIRED	GENOMIC	WGS	RANDOM	435	A59225	SRX2241911	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-19	TARGET-10-PASMGZ-10A-01D A59225 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59225_2_lanes_dupsFlagged.bam	SRR4419494	@dbgap@:reads/SRP011999/SRS1761325/SRX2241911/SRR4419494/SRR4419494.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASMGZ-09A-01D_TARGET-10-PASMGZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASMGZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASMVF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-04A-01D	DNA	EFO	SRS270621	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F09	SRX122690	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-04A-01D GS00868-CLS_F09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38546-FS3_L01.bam	SRR415037	@dbgap@:reads/SRP011999/SRS270621/SRX122690/SRR415037/SRR415037.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASMVF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-09A-01D	DNA	EFO	SRS270622	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F11	SRX122691	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-09A-01D GS00868-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38547-FS3_L01.bam	SRR415029	@dbgap@:reads/SRP011999/SRS270622/SRX122691/SRR415029/SRR415029.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASMVF_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASMVF_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsPrimary.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASMVF_NormalVsRecurrent.png	4			
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASMVF_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASMVF_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASMVF	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASMVF-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASMVF-10A-01D	DNA	EFO	SRS270623	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D01	SRX122689	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASMVF-10A-01D GS00868-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39328-FS3_L01.bam	SRR415045	@dbgap@:reads/SRP011999/SRS270623/SRX122689/SRR415045/SRR415045.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASNJI-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASNJI.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASNJI-09A-01D.indel.vcf	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASNJI-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASNJI-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-09A-01D	DNA	EFO	SRS1761316	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-09A-01D A59105 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59105	SRX2241902	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASNJI-09A-01D A59105 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59105_3_lanes_dupsFlagged.bam	SRR4419543	@dbgap@:reads/SRP011999/SRS1761316/SRX2241902/SRR4419543/SRR4419543.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASNJI-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASNJI-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASNJI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASNJI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASNJI-10A-01D	DNA	EFO	SRS1761272	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASNJI-10A-01D A59215 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59215	SRX2241858	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASNJI-10A-01D A59215 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59215_2_lanes_dupsFlagged.bam	SRR4419501	@dbgap@:reads/SRP011999/SRS1761272/SRX2241858/SRR4419501/SRR4419501.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASNJI-09A-01D_TARGET-10-PASNJI-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASNJI.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASREU-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASREU.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASREU-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASREU.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASREU-09A-01D.indel.vcf	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASREU-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASREU-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-09A-01D	DNA	EFO	SRS1761308	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-09A-01D A59106 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59106	SRX2241894	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASREU-09A-01D A59106 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59106_3_lanes_dupsFlagged.bam	SRR4419518	@dbgap@:reads/SRP011999/SRS1761308/SRX2241894/SRR4419518/SRR4419518.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASREU-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASREU-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASREU	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASREU-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASREU-10A-01D	DNA	EFO	SRS1761346	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASREU-10A-01D A59216 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59216	SRX2241934	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASREU-10A-01D A59216 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59216_2_lanes_dupsFlagged.bam	SRR4419548	@dbgap@:reads/SRP011999/SRS1761346/SRX2241934/SRR4419548/SRR4419548.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASREU-09A-01D_TARGET-10-PASREU-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASREU.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRSV-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASRSV.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRSV-03A-01D.indel.vcf	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRSV-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRSV-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-03A-01D	DNA	EFO	SRS1761309	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-03A-01D A59077 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59077	SRX2241895	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRSV-03A-01D A59077 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59077_3_lanes_dupsFlagged.bam	SRR4419547	@dbgap@:reads/SRP011999/SRS1761309/SRX2241895/SRR4419547/SRR4419547.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRSV-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRSV-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRSV	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRSV-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRSV-10A-01D	DNA	EFO	SRS1761270	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRSV-10A-01D A59187 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59187	SRX2241856	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRSV-10A-01D A59187 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59187_2_lanes_dupsFlagged.bam	SRR4419473	@dbgap@:reads/SRP011999/SRS1761270/SRX2241856/SRR4419473/SRR4419473.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRSV-03A-01D_TARGET-10-PASRSV-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRSV.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRWZ-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASRWZ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRWZ-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASRWZ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRWZ-03A-01D.indel.vcf	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRWZ-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRWZ-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-03A-01D	DNA	EFO	SRS1761329	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-03A-01D A59107 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59107	SRX2241915	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASRWZ-03A-01D A59107 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59107_3_lanes_dupsFlagged.bam	SRR4419482	@dbgap@:reads/SRP011999/SRS1761329/SRX2241915/SRR4419482/SRR4419482.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRWZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRWZ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRWZ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRWZ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRWZ-10A-01D	DNA	EFO	SRS1761280	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRWZ-10A-01D A59217 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59217	SRX2241866	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASRWZ-10A-01D A59217 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59217_2_lanes_dupsFlagged.bam	SRR4419465	@dbgap@:reads/SRP011999/SRS1761280/SRX2241866/SRR4419465/SRR4419465.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRWZ-03A-01D_TARGET-10-PASRWZ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRWZ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASRXC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-09A-01D	DNA	EFO	SRS301003	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_B11	SRX176296	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-09A-01D GS01042-CLS_B11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48788-FS3_L01.bam	SRR538313	@dbgap@:reads/SRP011999/SRS301003/SRX176296/SRR538313/SRR538313.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASRXC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASRXC_NormalVsPrimary.png	4			
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASRXC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASRXC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASRXC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRXC-14A	organism part	EFO	Bone Marrow	NCIt	"Bone Marrow Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRXC-14A-01D	DNA	EFO	SRS301004	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_C11	SRX176295	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASRXC-14A-01D GS01042-CLS_C11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48789-FS3_L01.bam	SRR538320	@dbgap@:reads/SRP011999/SRS301004/SRX176295/SRR538320/SRR538320.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRYW-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASRYW.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRYW-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASRYW.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASRYW-03A-01D.indel.vcf	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRYW-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRYW-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-03A-01D	DNA	EFO	SRS1761300	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-03A-01D A59078 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59078	SRX2241886	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASRYW-03A-01D A59078 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59078_3_lanes_dupsFlagged.bam	SRR4419483	@dbgap@:reads/SRP011999/SRS1761300/SRX2241886/SRR4419483/SRR4419483.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASRYW-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASRYW-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASRYW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASRYW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASRYW-10A-01D	DNA	EFO	SRS1761264	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASRYW-10A-01D A59188 library	PAIRED	GENOMIC	WGS	RANDOM	442	A59188	SRX2241850	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASRYW-10A-01D A59188 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59188_2_lanes_dupsFlagged.bam	SRR4419526	@dbgap@:reads/SRP011999/SRS1761264/SRX2241850/SRR4419526/SRR4419526.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASRYW-03A-01D_TARGET-10-PASRYW-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASRYW.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASSXJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-03A-01D	DNA	EFO	SRS270624	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_D03	SRX122375	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-03A-01D GS00868-CLS_D03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38544-FS3_L01.bam	SRR414265	@dbgap@:reads/SRP011999/SRS270624/SRX122375/SRR414265/SRR414265.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASSXJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-04A-01D	DNA	EFO	SRS270625	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_F04	SRX122374	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-04A-01D GS00868-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38543-FS3_L01.bam	SRR414273	@dbgap@:reads/SRP011999/SRS270625/SRX122374/SRR414273/SRR414273.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASSXJ_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASSXJ_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsPrimary.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASSXJ_NormalVsRecurrent.png	4			
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASSXJ_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASSXJ_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASSXJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASSXJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASSXJ-10A-01D	DNA	EFO	SRS270626	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A03	SRX122373	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASSXJ-10A-01D GS00868-CLS_A03 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39221-FS3_L01.bam	SRR414281	@dbgap@:reads/SRP011999/SRS270626/SRX122373/SRR414281/SRR414281.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTLM-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASTLM.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTLM-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASTLM.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTLM-03A-01D.indel.vcf	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTLM-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTLM-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-03A-01D	DNA	EFO	SRS1761302	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-03A-01D A59082 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59082	SRX2241888	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTLM-03A-01D A59082 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59082_3_lanes_dupsFlagged.bam	SRR4419549	@dbgap@:reads/SRP011999/SRS1761302/SRX2241888/SRR4419549/SRR4419549.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTLM-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTLM-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTLM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTLM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTLM-10A-01D	DNA	EFO	SRS1761326	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTLM-10A-01D A59192 library	PAIRED	GENOMIC	WGS	RANDOM	443	A59192	SRX2241912	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTLM-10A-01D A59192 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59192_2_lanes_dupsFlagged.bam	SRR4419474	@dbgap@:reads/SRP011999/SRS1761326/SRX2241912/SRR4419474/SRR4419474.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTLM-03A-01D_TARGET-10-PASTLM-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTLM.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTSR-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASTSR.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTSR-09A-01D.indel.vcf	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTSR-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTSR-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-09A-01D	DNA	EFO	SRS1761303	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-09A-01D A59088 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59088	SRX2241889	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTSR-09A-01D A59088 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59088_3_lanes_dupsFlagged.bam	SRR4419522	@dbgap@:reads/SRP011999/SRS1761303/SRX2241889/SRR4419522/SRR4419522.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTSR-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTSR-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTSR	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTSR-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTSR-10A-01D	DNA	EFO	SRS1761255	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTSR-10A-01D A59198 library	PAIRED	GENOMIC	WGS	RANDOM	421	A59198	SRX2241840	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTSR-10A-01D A59198 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59198_2_lanes_dupsFlagged.bam	SRR4419500	@dbgap@:reads/SRP011999/SRS1761255/SRX2241840/SRR4419500/SRR4419500.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTSR-09A-01D_TARGET-10-PASTSR-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTSR.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTYT-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASTYT.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASTYT-09A-01D.indel.vcf	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTYT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTYT-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-09A-01D	DNA	EFO	SRS1761335	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-09A-01D A59079 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59079	SRX2241923	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASTYT-09A-01D A59079 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59079_3_lanes_dupsFlagged.bam	SRR4419471	@dbgap@:reads/SRP011999/SRS1761335/SRX2241923/SRR4419471/SRR4419471.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASTYT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASTYT-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASTYT	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASTYT-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASTYT-10A-01D	DNA	EFO	SRS1761327	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASTYT-10A-01D A59189 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59189	SRX2241913	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASTYT-10A-01D A59189 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59189_2_lanes_dupsFlagged.bam	SRR4419512	@dbgap@:reads/SRP011999/SRS1761327/SRX2241913/SRR4419512/SRR4419512.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASTYT-09A-01D_TARGET-10-PASTYT-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASTYT.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASUBW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-04A-01D	DNA	EFO	SRS270627	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_C05	SRX122366	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-04A-01D GS00868-CLS_C05 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38538-FS3_L01.bam	SRR414193	@dbgap@:reads/SRP011999/SRS270627/SRX122366/SRR414193/SRR414193.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASUBW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-09A-01D	DNA	EFO	SRS270628	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_A09	SRX122365	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-09A-01D GS00868-CLS_A09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39228-FS3_L01.bam	SRR414201	@dbgap@:reads/SRP011999/SRS270628/SRX122365/SRR414201/SRR414201.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASUBW_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASUBW_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsPrimary.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASUBW_NormalVsRecurrent.png	4			
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASUBW_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASUBW_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASUBW	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUBW-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUBW-10A-01D	DNA	EFO	SRS270629	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00868-CLS_H09	SRX122364	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASUBW-10A-01D GS00868-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38541-FS3_L01.bam	SRR414209	@dbgap@:reads/SRP011999/SRS270629/SRX122364/SRR414209/SRR414209.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASUWG-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASUWG.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASUWG-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASUWG.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASUWG-03A-01D.indel.vcf	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASUWG-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASUWG-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-03A-01D	DNA	EFO	SRS1761311	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-03A-01D A59108 library	PAIRED	GENOMIC	WGS	RANDOM	427	A59108	SRX2241897	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASUWG-03A-01D A59108 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59108_3_lanes_dupsFlagged.bam	SRR4419491	@dbgap@:reads/SRP011999/SRS1761311/SRX2241897/SRR4419491/SRR4419491.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASUWG-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASUWG-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASUWG	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASUWG-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASUWG-10A-01D	DNA	EFO	SRS1761292	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASUWG-10A-01D A59218 library	PAIRED	GENOMIC	WGS	RANDOM	426	A59218	SRX2241878	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASUWG-10A-01D A59218 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59218_2_lanes_dupsFlagged.bam	SRR4419467	@dbgap@:reads/SRP011999/SRS1761292/SRX2241878/SRR4419467/SRR4419467.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASUWG-03A-01D_TARGET-10-PASUWG-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASUWG.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASWUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-03A-01D	DNA	EFO	SRS489864	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_F11	SRX363136	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-03A-01D GS01997-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63048-FS3_L01.bam	SRR1008264	@dbgap@:reads/SRP011999/SRS489864/SRX363136/SRR1008264/SRR1008264.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASWUH_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASWUH_NormalVsPrimary.png	4			
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASWUH_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASWUH_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASWUH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASWUH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASWUH-10A-01D	DNA	EFO	SRS489863	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_G11	SRX363135	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASWUH-10A-01D GS01997-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS63049-FS3_L01.bam	SRR1008271	@dbgap@:reads/SRP011999/SRS489863/SRX363135/SRR1008271/SRR1008271.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASXFY-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASXFY.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASXFY-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASXFY.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASXFY-09A-01D.indel.vcf	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASXFY-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASXFY-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-09A-01D	DNA	EFO	SRS1761287	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-09A-01D A59080 library	PAIRED	GENOMIC	WGS	RANDOM	418	A59080	SRX2241873	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PASXFY-09A-01D A59080 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59080_3_lanes_dupsFlagged.bam	SRR4419536	@dbgap@:reads/SRP011999/SRS1761287/SRX2241873/SRR4419536/SRR4419536.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASXFY-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASXFY-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXFY	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXFY-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXFY-10A-01D	DNA	EFO	SRS1761305	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXFY-10A-01D A59190 library	PAIRED	GENOMIC	WGS	RANDOM	430	A59190	SRX2241891	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PASXFY-10A-01D A59190 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59190_2_lanes_dupsFlagged.bam	SRR4419519	@dbgap@:reads/SRP011999/SRS1761305/SRX2241891/SRR4419519/SRR4419519.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASXFY-09A-01D_TARGET-10-PASXFY-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXFY.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASXZH-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PASXZH.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PASXZH-09A-01D.indel.vcf	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASXZH-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASXZH-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-09A-01D	DNA	EFO	SRS1761347	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-09A-01D A59109 library	PAIRED	GENOMIC	WGS	RANDOM	432	A59109	SRX2241935	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PASXZH-09A-01D A59109 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59109_3_lanes_dupsFlagged.bam	SRR4419498	@dbgap@:reads/SRP011999/SRS1761347/SRX2241935/SRR4419498/SRR4419498.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.quality_tagged.vcf	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PASXZH-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PASXZH-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PASXZH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASXZH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASXZH-10A-01D	DNA	EFO	SRS1761314	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PASXZH-10A-01D A59219 library	PAIRED	GENOMIC	WGS	RANDOM	441	A59219	SRX2241900	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PASXZH-10A-01D A59219 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59219_2_lanes_dupsFlagged.bam	SRR4419504	@dbgap@:reads/SRP011999/SRS1761314/SRX2241900/SRR4419504/SRR4419504.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PASXZH-09A-01D_TARGET-10-PASXZH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PASXZH.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASYGM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-03A-01D	DNA	EFO	SRS301005	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_D11	SRX160620	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-03A-01D GS01042-CLS_D11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48786-FS3_L01.bam	SRR523738	@dbgap@:reads/SRP011999/SRS301005/SRX160620/SRR523738/SRR523738.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PASYGM_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PASYGM_NormalVsPrimary.png	4			
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PASYGM_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PASYGM_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PASYGM	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PASYGM-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PASYGM-10A-01D	DNA	EFO	SRS301006	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_E11	SRX160619	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PASYGM-10A-01D GS01042-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS48787-FS3_L01.bam	SRR523746	@dbgap@:reads/SRP011999/SRS301006/SRX160619/SRR523746/SRR523746.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATAAH-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATAAH.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATAAH-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATAAH.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATAAH-09A-01D.indel.vcf	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATAAH-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATAAH-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-09A-01D	DNA	EFO	SRS1761298	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-09A-01D A59110 library	PAIRED	GENOMIC	WGS	RANDOM	437	A59110	SRX2241884	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATAAH-09A-01D A59110 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59110_3_lanes_dupsFlagged.bam	SRR4419517	@dbgap@:reads/SRP011999/SRS1761298/SRX2241884/SRR4419517/SRR4419517.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATAAH-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATAAH-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATAAH	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATAAH-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATAAH-10A-01D	DNA	EFO	SRS1761341	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATAAH-10A-01D A59220 library	PAIRED	GENOMIC	WGS	RANDOM	444	A59220	SRX2241929	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATAAH-10A-01D A59220 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59220_2_lanes_dupsFlagged.bam	SRR4419472	@dbgap@:reads/SRP011999/SRS1761341/SRX2241929/SRR4419472/SRR4419472.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATAAH-09A-01D_TARGET-10-PATAAH-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATAAH.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATCJJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATCJJ.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATCJJ-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATCJJ.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATCJJ-09A-01D.indel.vcf	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATCJJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATCJJ-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-09A-01D	DNA	EFO	SRS1761258	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-09A-01D A59111 library	PAIRED	GENOMIC	WGS	RANDOM	412	A59111	SRX2241844	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-11	TARGET-10-PATCJJ-09A-01D A59111 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59111_3_lanes_dupsFlagged.bam	SRR4419492	@dbgap@:reads/SRP011999/SRS1761258/SRX2241844/SRR4419492/SRR4419492.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATCJJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATCJJ-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATCJJ	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCJJ-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCJJ-10A-01D	DNA	EFO	SRS1761271	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATCJJ-10A-01D A59221 library	PAIRED	GENOMIC	WGS	RANDOM	439	A59221	SRX2241857	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATCJJ-10A-01D A59221 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59221_2_lanes_dupsFlagged.bam	SRR4419489	@dbgap@:reads/SRP011999/SRS1761271/SRX2241857/SRR4419489/SRR4419489.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATCJJ-09A-01D_TARGET-10-PATCJJ-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATCJJ.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATCTI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-04A-01D	DNA	EFO	SRS270630	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B04	SRX122377	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-04A-01D GS00869-CLS_B04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39086-FS3_L01.bam	SRR414297	@dbgap@:reads/SRP011999/SRS270630/SRX122377/SRR414297/SRR414297.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATCTI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-09A-01D	DNA	EFO	SRS270631	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_D01	SRX122378	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-09A-01D GS00869-CLS_D01 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39037-FS3_L01.bam	SRR414289	@dbgap@:reads/SRP011999/SRS270631/SRX122378/SRR414289/SRR414289.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATCTI_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATCTI_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsPrimary.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATCTI_NormalVsRecurrent.png	4			
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATCTI_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATCTI_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATCTI	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATCTI-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATCTI-10A-01D	DNA	EFO	SRS270632	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H10	SRX122376	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATCTI-10A-01D GS00869-CLS_H10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS39036-FS3_L01.bam	SRR414305	@dbgap@:reads/SRP011999/SRS270632/SRX122376/SRR414305/SRR414305.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATELK-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATELK.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATELK-03A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATELK.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATELK-03A-01D.indel.vcf	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATELK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATELK-03A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-03A-01D	DNA	EFO	SRS1761283	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-03A-01D A59081 library	PAIRED	GENOMIC	WGS	RANDOM	431	A59081	SRX2241869	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATELK-03A-01D A59081 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59081_3_lanes_dupsFlagged.bam	SRR4419480	@dbgap@:reads/SRP011999/SRS1761283/SRX2241869/SRR4419480/SRR4419480.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATELK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATELK-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATELK	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATELK-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATELK-10A-01D	DNA	EFO	SRS1761310	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATELK-10A-01D A59191 library	PAIRED	GENOMIC	WGS	RANDOM	420	A59191	SRX2241896	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-14	TARGET-10-PATELK-10A-01D A59191 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59191_2_lanes_dupsFlagged.bam	SRR4419550	@dbgap@:reads/SRP011999/SRS1761310/SRX2241896/SRR4419550/SRR4419550.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATELK-03A-01D_TARGET-10-PATELK-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATELK.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATEVE-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATEVE.gv2.genome.fusions.somatic.large.summary.tsv	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATEVE-09A-01D.fusion.vcf	3	bcgsc.ca:Protocol:WGS-StructVariant-GenomeValidator:01	TARGET-10-PATEVE.gv2.genome.fusions.somatic.small.summary.tsv	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-ABySS:01		TARGET-10-PATEVE-09A-01D.indel.vcf	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATEVE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATEVE-09A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-09A-01D	DNA	EFO	SRS1761317	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-09A-01D A59089 library	PAIRED	GENOMIC	WGS	RANDOM	433	A59089	SRX2241903	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-08	TARGET-10-PATEVE-09A-01D A59089 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59089_3_lanes_dupsFlagged.bam	SRR4419515	@dbgap@:reads/SRP011999/SRS1761317/SRX2241903/SRR4419515/SRR4419515.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01		TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-StructVariant-DELLY:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.quality_tagged.vcf	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup:01		TARGET-10-PATEVE-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Mpileup-Vcf2Tab:01	TARGET-10-PATEVE-10A-01D.varFilter.eff.dbSNP_v137.COSMIC_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Mpileup-MutationSeq:01	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3						
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Indel:01	TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.indel.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3			
TARGET-10-PATEVE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATEVE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATEVE-10A-01D	DNA	EFO	SRS1761273	bcgsc.ca:Protocol:WGS-LibraryPrep-Illumina:01	BC Cancer Agency Michael Smith Genome Sciences Centre	TARGET-10-PATEVE-10A-01D A59199 library	PAIRED	GENOMIC	WGS	RANDOM	434	A59199	SRX2241859	bcgsc.ca:Protocol:WGS-Sequence-Illumina-HiSeq2500:01	BCCA	2016-04-18	TARGET-10-PATEVE-10A-01D A59199 run	sequencing assay	EFO	250	bcgsc.ca:Protocol:WGS-BaseCall-Illumina:01	Illumina RTA 1.18.66.3	bcgsc.ca:Protocol:WGS-ReadAlign-BWA-Picard:01	A59199_2_lanes_dupsFlagged.bam	SRR4419469	@dbgap@:reads/SRP011999/SRS1761273/SRX2241859/SRR4419469/SRR4419469.sra	2	GRCh37-lite		bcgsc.ca:Protocol:WGS-VariantCall-Strelka:01		TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.vcf	3	bcgsc.ca:Protocol:WGS-Strelka-Vcf2Tab-Snv:01	TARGET-10-PATEVE-09A-01D_TARGET-10-PATEVE-10A-01D.somatic.snv.dbSNP_v137.cosmic_v64.annotations.tab_delimited.txt	3	bcgsc.ca:Protocol:WGS-CombineSomaticSnvs:01	TARGET-10-PATEVE.combined_somatic_snvs.tab_delimited.txt	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATISC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-09A-01D	DNA	EFO	SRS301007	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-09A-01D GS01042-CLS_F11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_F11	SRX160080	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-09A-01D GS01042-CLS_F11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47312-FS3_L01.bam	SRR521730	@dbgap@:reads/SRP011999/SRS301007/SRX160080/SRR521730/SRR521730.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATISC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATISC_NormalVsPrimary.png	4			
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATISC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATISC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATISC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATISC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATISC-10A-01D	DNA	EFO	SRS301008	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATISC-10A-01D GS01042-CLS_G11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01042-CLS_G11	SRX160079	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATISC-10A-01D GS01042-CLS_G11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS47314-FS3_L01.bam	SRR521737	@dbgap@:reads/SRP011999/SRS301008/SRX160079/SRR521737/SRR521737.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATRIC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-03A-01D	DNA	EFO	SRS489914	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_H11	SRX363186	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-03A-01D GS01997-CLS_H11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64770-FS3_L01.bam	SRR1008613	@dbgap@:reads/SRP011999/SRS489914/SRX363186/SRR1008613/SRR1008613.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATRIC_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATRIC_NormalVsPrimary.png	4			
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATRIC_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATRIC_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATRIC	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	male	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATRIC-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATRIC-10A-01D	DNA	EFO	SRS489913	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 library	PAIRED	GENOMIC	WGS	RANDOM		GS01997-CLS_A12	SRX363185	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATRIC-10A-01D GS01997-CLS_A12 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS64664-FS3_L01.bam	SRR1008620	@dbgap@:reads/SRP011999/SRS489913/SRX363185/SRR1008620/SRR1008620.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATTEE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-03A	organism part	EFO	Peripheral Blood	NCIt	"Primary Blood Derived Cancer - Peripheral Blood"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-03A-01D	DNA	EFO	SRS270633	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_F04	SRX122347	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-03A-01D GS00869-CLS_F04 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37414-FS3_L01.bam	SRR414057	@dbgap@:reads/SRP011999/SRS270633/SRX122347/SRR414057/SRR414057.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATTEE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Recurrent Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-04A	organism part	EFO	Bone Marrow	NCIt	"Recurrent Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-04A-01D	DNA	EFO	SRS270634	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_H09	SRX122348	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-04A-01D GS00869-CLS_H09 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS38055-FS3_L01.bam	SRR414049	@dbgap@:reads/SRP011999/SRS270634/SRX122348/SRR414049/SRR414049.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATTEE_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PATTEE_NormalVsRecurrent.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_May_14_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsPrimary.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PATTEE_NormalVsRecurrent.png	4			
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	all_verified_variants_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PATTEE_NormalVsRecurrent.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PATTEE_NormalVsRecurrent.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_May_14_2014.tsv	3
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PATTEE	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PATTEE-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PATTEE-10A-01D	DNA	EFO	SRS270635	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 library	PAIRED	GENOMIC	WGS	RANDOM		GS00869-CLS_B08	SRX122346	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PATTEE-10A-01D GS00869-CLS_B08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS37980-FS3_L01.bam	SRR414065	@dbgap@:reads/SRP011999/SRS270635/SRX122346/SRR414065/SRR414065.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Relapse_20160615.maf.txt	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-09A	organism part	EFO	Bone Marrow	NCIt	"Primary Blood Derived Cancer - Bone Marrow"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-09A-01D	DNA	EFO	SRS502952	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 library	PAIRED	GENOMIC	WGS	RANDOM		GS02031-CLS_E11	SRX378157	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-09A-01D GS02031-CLS_E11 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69122-FS3_L01.bam	SRR1030572	@dbgap@:reads/SRP011999/SRS502952/SRX378157/SRR1030572/SRR1030572.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsPrimary.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsPrimary.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsPrimary.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsPrimary.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-CnvSegment-CONCERTING-CGI:01		TARGET_BALL_WGS_CNVLOH.tsv	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-StructVariant-CGI:01		TARGET_BALL_WGS_SV.tsv	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-10A	organism part	EFO	Peripheral Blood	NCIt	"Blood Derived Normal"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-10A-01D	DNA	EFO	SRS509610	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 library	PAIRED	GENOMIC	WGS	RANDOM		GS02050-CLS_C08	SRX385501	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-10A-01D GS02050-CLS_C08 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70014-FS3_L01.bam	SRR1041043	@dbgap@:reads/SRP011999/SRS509610/SRX385501/SRR1041043/SRR1041043.sra	2	GRCh37-lite		stjude.org:Protocol:WGS-VariantCall-CGI:01		TARGET_BALL_WGS_Diagnosis_20160615.maf.txt	3						
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft1C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft1C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.1C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.1C-01D	DNA	EFO	SRS511149	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_E10	SRX387248	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.1C-01D GS02039-CLS_E10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS69502-FS3_L01.bam	SRR1043145	@dbgap@:reads/SRP011999/SRS511149/SRX387248/SRR1043145/SRR1043145.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft1C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft1C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft2C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft2C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.2C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.2C-01D	DNA	EFO	SRS511670	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_F10	SRX387774	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.2C-01D GS02039-CLS_F10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70336-FS3_L01.bam	SRR1043895	@dbgap@:reads/SRP011999/SRS511670/SRX387774/SRR1043895/SRR1043895.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft2C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft2C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-CnvSegment-CGI:01		somaticCnvSegmentsDiploidBeta_TARGET-10-PAUXZX_NormalVsXenograft3C.tsv	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-Junction-CGI:01		ConcatenatedJunctionFileFinal_ALL_Xenografts_July_8_2014.txt	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Circos-CGI:01	somaticCircos_TARGET-10-PAUXZX_NormalVsXenograft3C.png	4			
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-FilterSomatic-CGI:01	somaticFilteredMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_details_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	sqhigh_and_verified_variants_in_genes_somatic_non_silent_summary_with_filters_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	total_variant_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_non_silent_details_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_somatic_and_loh_summary_ALL_Xenografts_July_11_2014.tsv	3
TARGET-10-PAUXZX	Children's Oncology Group	whole organism	EFO	Homo sapiens	NCBITaxon	female	NCIt	Childhood B Acute Lymphoblastic Leukemia	NCIt	Discovery	phs000464	TARGET-10-PAUXZX-60.3C	organism part	EFO	Xenograft	NCIt	"Xenograft, primary"	nationwidechildrens.org:Protocol:DNA-Extraction-Qiagen-QIAamp:01	Nationwide Children's Hospital Biospecimen Core Repository	TARGET-10-PAUXZX-60.3C-01D	DNA	EFO	SRS511113	completegenomics.com:Protocol:WGS-LibraryPrep-CGI:01	Complete Genomics Inc.	TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 library	PAIRED	GENOMIC	WGS	RANDOM		GS02039-CLS_G10	SRX387209	completegenomics.com:Protocol:WGS-Sequence-CGI-CGI:01	CGI		TARGET-10-PAUXZX-60.3C-01D GS02039-CLS_G10 run	sequencing assay	EFO	70	completegenomics.com:Protocol:WGS-BaseCall-CGI:01		completegenomics.com:Protocol:WGS-ReadAlign-CGI:01	GS70335-FS3_L01.bam	SRR1043079	@dbgap@:reads/SRP011999/SRS511113/SRX387209/SRR1043079/SRR1043079.sra	2	GRCh37-lite		completegenomics.com:Protocol:WGS-VariantCall-CGI:01		fullVcf_TARGET-10-PAUXZX_NormalVsXenograft3C.vcf.bz2	3	completegenomics.com:Protocol:WGS-Vcf2Maf-CGI:01	fullMaf_TARGET-10-PAUXZX_NormalVsXenograft3C.maf.txt	3	completegenomics.com:Protocol:WGS-HigherLevelSummary-CGI:01	variants_in_genes_summary_ALL_Xenografts_July_11_2014.tsv	3
